Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E18
         (423 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4TD94 Cluster: Chromosome undetermined SCAF6413, whole...    32   5.6  
UniRef50_Q08NE7 Cluster: Chemotaxis methyltransferase CheR; n=1;...    32   5.6  
UniRef50_Q4S9I5 Cluster: Chromosome undetermined SCAF14696, whol...    31   7.4  
UniRef50_O87314 Cluster: FxbC; n=5; Mycobacterium smegmatis|Rep:...    31   7.4  
UniRef50_Q555N1 Cluster: Putative uncharacterized protein; n=3; ...    31   7.4  
UniRef50_Q6K655 Cluster: Putative disease resistance protein I2;...    31   9.7  
UniRef50_Q5KHW2 Cluster: Putative uncharacterized protein; n=1; ...    31   9.7  

>UniRef50_Q4TD94 Cluster: Chromosome undetermined SCAF6413, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF6413, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 257

 Score = 31.9 bits (69), Expect = 5.6
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 114 TACHCRVVDGGRPRRRWCSGCGTGSISAT--TCRLER 218
           T+ H +V DG  PRRRW S       SAT  TCR  R
Sbjct: 35  TSRHLQVSDGDSPRRRWSSPSWRRRASATWRTCRQVR 71


>UniRef50_Q08NE7 Cluster: Chemotaxis methyltransferase CheR; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Chemotaxis
           methyltransferase CheR - Stigmatella aurantiaca DW4/3-1
          Length = 497

 Score = 31.9 bits (69), Expect = 5.6
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 144 GRPRRRWCSGCGTGSISATTCRLERSRSSTPVS*LL---LNIHLFTKSETLPFAICVMTI 314
           GRP R W +GC TG   AT   L     + P S +L   ++     ++ TL F    +  
Sbjct: 99  GRPLRVWSAGCATGEEVATLLILLDEAGADPTSSVLGTDISEQALLRARTLTFHPEQVRR 158

Query: 315 SYSSVRESFYYS 350
             +SVR+ ++ S
Sbjct: 159 LPASVRDRYFLS 170


>UniRef50_Q4S9I5 Cluster: Chromosome undetermined SCAF14696, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF14696,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 706

 Score = 31.5 bits (68), Expect = 7.4
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 111 RTACHCRVVDGGRPRRRWCSGCGTGSISATTCRLERSRSSTP 236
           R+  H +  DG  P R    GC T S S+   R   SRSS P
Sbjct: 455 RSTAHTK--DGSTPSRSSSDGCSTASQSSVDSRSSPSRSSNP 494


>UniRef50_O87314 Cluster: FxbC; n=5; Mycobacterium smegmatis|Rep:
           FxbC - Mycobacterium smegmatis
          Length = 4976

 Score = 31.5 bits (68), Expect = 7.4
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 158 ALVQWV-RHRLDLSNDLPT*TQ*EFDSGLVAAAKHTP 265
           ALV +  RHR+D+ N  PT     FD+GL+    HTP
Sbjct: 294 ALVAYCHRHRIDVINVTPTYAHHLFDAGLLDDGAHTP 330


>UniRef50_Q555N1 Cluster: Putative uncharacterized protein; n=3;
            Dictyostelium discoideum|Rep: Putative uncharacterized
            protein - Dictyostelium discoideum AX4
          Length = 1203

 Score = 31.5 bits (68), Expect = 7.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 257  HTPVHKK*NSTFCHLCNDNKLQ--FRSRIFLLQP*MCIASNDTLANH 391
            H P H++ + T C+ C    +Q  F  RIFL    + + SN  L+NH
Sbjct: 966  HQPQHRQ-SFTNCNHCEHLNIQPVFMGRIFLFSKKLIVDSNKVLSNH 1011


>UniRef50_Q6K655 Cluster: Putative disease resistance protein I2; n=2;
            Oryza sativa|Rep: Putative disease resistance protein I2
            - Oryza sativa subsp. japonica (Rice)
          Length = 1289

 Score = 31.1 bits (67), Expect = 9.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 375  SLLAMHIYGCNKKIRERNCNLLSLHKWQKV 286
            SL ++HIYGC+ ++++R C     H W K+
Sbjct: 1252 SLTSLHIYGCSSELKKR-CQKHVGHDWVKI 1280


>UniRef50_Q5KHW2 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 342

 Score = 31.1 bits (67), Expect = 9.7
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 232 VELLLRSSRQVVAEIEPVPHPLHQRLLG-RPPSTTR 128
           VEL+L++SR ++ +  P PH L Q  L   PPS +R
Sbjct: 265 VELILQTSRLMIFKSPPAPHSLLQNFLPVLPPSISR 300


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 328,627,152
Number of Sequences: 1657284
Number of extensions: 5524146
Number of successful extensions: 16184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16182
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)