Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E18
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    28   0.69 
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    27   1.2  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    26   2.8  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   3.7  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   3.7  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   6.4  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    24   8.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   8.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    24   8.5  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 195 ATTCRLERSRSSTPVS*LLLNIHLFTKSETLPFAIC-VMTISYSSVRESFYY 347
           ATT   E+   S PV+       LF+K E + F  C  + I+ S    S YY
Sbjct: 51  ATTSNSEQKEISPPVTSGAPKHRLFSKDEWMHFITCQALNITLSETDSSKYY 102


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 273 KSETLPFAICVMTISYSSVRESFYYSRKCALQVTTH 380
           KSE  PF IC +T S    ++   Y R C   +  H
Sbjct: 648 KSEESPFEICPVTYSIEQEKKLEKYKRVCLRGLDIH 683


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 264 LFTKSETLPFAICVMTISYSSVRESFYYS 350
           ++ K    PFAI ++ ++ S+V  SF+Y+
Sbjct: 151 IYLKHNVNPFAIFILPLTQSAVFFSFFYA 179


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 244 YETGVELLLRSSRQVVAEIEPVPHPLHQRLLGRPPSTTRQWQAVR 110
           Y   +ELLL S+ +     E      HQR L R  +  +QW A R
Sbjct: 247 YRKNIELLLESTDEF--HYEQGNLGFHQRQLAREQAKIQQWIAKR 289


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -3

Query: 286 RVSLFVNRCMFSSSYETGVELLLRSSRQVVAEI-EPVPHPLHQRLLGRPPSTT 131
           R+    N C   S Y    E   RSS +++ E  E V   L  +LL  P  T+
Sbjct: 69  RIPTISNVCRARSIYSAAQENAYRSSVKLIQEYSEKVHKKLQAKLLENPSETS 121


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +3

Query: 303 VMTISYSSVRESFYYSRKCALQVTTH*RIILIRLWM 410
           ++T+ Y+SV+ES Y+S K A+ +++    +  RL++
Sbjct: 305 ILTLLYNSVKES-YHSFKHAMSISSIRLFLFSRLFI 339


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 279 ETLPFAICVMTISYSSVRESFYYS 350
           + LPFA C +  SY S + S  Y+
Sbjct: 145 QDLPFAFCYLFSSYFSYKSSRQYT 168


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 292 KGRVSLFVNRCMFSSSYETG 233
           K  +SLF  RC+    YETG
Sbjct: 736 KFTISLFNVRCLIGPDYETG 755


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 249 LLNIHLFTKSETLPFAICVMTISYSSVRESFYYSR 353
           LLN +L   S+T+  A   +T    +++   YY R
Sbjct: 879 LLNFYLIENSKTIDEATLQLTDLIQAIKTGIYYLR 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,018
Number of Sequences: 5004
Number of extensions: 22585
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)