Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E18
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0349 + 18010414-18014283                                         31   0.38 
11_05_0061 + 18746520-18747218                                         29   1.5  
11_05_0054 - 18691386-18692084                                         29   1.5  
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215...    27   4.7  
04_03_0019 + 9457336-9457839                                           27   4.7  
12_01_0002 - 4477-6144,6571-7440                                       27   6.2  
11_01_0003 - 6099-7766,8193-9062                                       27   6.2  
11_01_0410 - 3111899-3112513,3112907-3112962,3113884-3114355           27   8.2  
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247...    27   8.2  

>02_03_0349 + 18010414-18014283
          Length = 1289

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 375  SLLAMHIYGCNKKIRERNCNLLSLHKWQKV 286
            SL ++HIYGC+ ++++R C     H W K+
Sbjct: 1252 SLTSLHIYGCSSELKKR-CQKHVGHDWVKI 1280


>11_05_0061 + 18746520-18747218
          Length = 232

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 235 GVELLLRSSRQVVAEIEPVPHPLHQRLLGRPPSTTRQ---WQAVRSEGAW 95
           G EL LR+S  VVA  E  P    QRL   PP +T     +     E AW
Sbjct: 171 GRELALRASTGVVAPQELWPDIQEQRLRHAPPDSTSDAALYAEAAEEAAW 220


>11_05_0054 - 18691386-18692084
          Length = 232

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 235 GVELLLRSSRQVVAEIEPVPHPLHQRLLGRPPSTTRQ---WQAVRSEGAW 95
           G EL LR+S  VVA  E  P    QRL   PP +T     +     E AW
Sbjct: 171 GRELALRASTGVVAPQELWPDIQEQRLRHAPPDSTSDAALYAEAAEEAAW 220


>04_04_1658 -
           35119623-35119754,35121033-35121121,35121205-35121599,
           35122009-35122091,35122163-35124184,35124859-35124927,
           35125050-35125130,35125215-35125308,35125435-35125499,
           35125961-35126038,35126115-35126360
          Length = 1117

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 175 HPLHQRLLGRPPSTTRQWQAV-RSEGA 98
           + L +RL GRPPST   W+AV RS G+
Sbjct: 14  YELRERLGGRPPSTV-VWRAVERSSGS 39


>04_03_0019 + 9457336-9457839
          Length = 167

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 102 PSDRTACHCRVVDGGRPRRRWCSGCGTGSISATT 203
           PSD+TACH  +   G  + +      TG+   TT
Sbjct: 52  PSDQTACHSELSTNGNLKLKTSCAGRTGNAQVTT 85


>12_01_0002 - 4477-6144,6571-7440
          Length = 845

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 147 RPRRRWCSGCGTGSISATTCRL 212
           +PRRRW S   TG  SA  C +
Sbjct: 35  QPRRRWRSSLATGFRSALACTI 56


>11_01_0003 - 6099-7766,8193-9062
          Length = 845

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 147 RPRRRWCSGCGTGSISATTCRL 212
           +PRRRW S   TG  SA  C +
Sbjct: 35  QPRRRWRSSLATGFRSALACTI 56


>11_01_0410 - 3111899-3112513,3112907-3112962,3113884-3114355
          Length = 380

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 111 RTACHCRVVDGGRPRRRWCSGCGTG 185
           R + H R  +GG  R  W +GCG G
Sbjct: 53  RRSRHPRAREGGGRRASWPAGCGHG 77


>05_04_0312 -
           20123892-20124085,20124183-20124508,20124728-20124732,
           20125063-20125670,20125744-20125884,20126067-20126194,
           20126288-20126329,20126613-20126755
          Length = 528

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 ACHCRVVDGGRPRRRWCSG 173
           AC C + DGGR RRR C G
Sbjct: 23  ACSCFLRDGGRMRRR-CEG 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,389,640
Number of Sequences: 37544
Number of extensions: 163905
Number of successful extensions: 512
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)