Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E18
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21876| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     27   6.4  
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 27   8.5  
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_42266| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  

>SB_21876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 147 RPRRRWCSGCGTGSISATTCRLERSRSSTPVS 242
           R    WCS C + + + + CR +R R +  V+
Sbjct: 412 RRSEMWCSTCRSATHNDSACRRQRGRQTDKVN 443


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 135 VDGGRPRRRWCSGCGTGSISATTCRLERSRSSTPV 239
           +D  RPR    S     S+S T  RL+  RS++PV
Sbjct: 75  MDNLRPRSTMFSSTTRSSLSPTKTRLDAYRSTSPV 109


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 114  TACHCRVVDGGRPRRR-WCSGCGTG-SISATTCRL 212
            TAC CR++D G P     C    TG   +A  CRL
Sbjct: 930  TACQCRLIDTGLPHTACQCRFMDTGLPHTACQCRL 964


>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 NIHLFTKSETLPFAICVMTISYSS 326
           N+HL   +E  PF  C+  I+YSS
Sbjct: 165 NLHLNAVAEMAPFFFCMDRINYSS 188


>SB_42266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 339 KIRERNCNLLSLHKWQKVEFH 277
           K+ ER CNLLSL   +  ++H
Sbjct: 306 KVEERRCNLLSLRPERPFKYH 326


>SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1756

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 261 VCLAAATRPESNSYCVQVGRSLLRSSRCRTHCTSAS 154
           V ++  ++PE+ S    VG ++  +S  R  CTSAS
Sbjct: 497 VHVSVNSKPENTSLIKSVGSAVCVNSSMRLSCTSAS 532


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,830,239
Number of Sequences: 59808
Number of extensions: 191816
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)