Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E18
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin prote...    27   5.5  
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote...    27   5.5  
U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin prote...    27   5.5  
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote...    27   5.5  
AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin pro...    27   5.5  
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    26   9.7  
DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin f...    26   9.7  

>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
 Frame = +3

Query: 105 SDRTACHCRVVDGGRPRRRWCS--GCGTGSISATTCRL 212
           SD + C C   DG + RRR CS   C         C L
Sbjct: 462 SDWSTCSCTCGDGAKSRRRECSTNNCQGADYETEPCNL 499


>U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin protein
           1, isoform a protein.
          Length = 953

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 135 VDGGRPRRRWCSGCGTGSISATTCRLERSRSSTPVS*LLLNIHLFTK 275
           V  G PRR   +    GS SATT       S+TP S    N+  F++
Sbjct: 326 VQSGVPRRALNNKTPVGSTSATTSPAPPPTSTTPTSRREANMERFSR 372


>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
           1, isoform b protein.
          Length = 1028

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 135 VDGGRPRRRWCSGCGTGSISATTCRLERSRSSTPVS*LLLNIHLFTK 275
           V  G PRR   +    GS SATT       S+TP S    N+  F++
Sbjct: 401 VQSGVPRRALNNKTPVGSTSATTSPAPPPTSTTPTSRREANMERFSR 447


>U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin protein
           1, isoform c protein.
          Length = 962

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 135 VDGGRPRRRWCSGCGTGSISATTCRLERSRSSTPVS*LLLNIHLFTK 275
           V  G PRR   +    GS SATT       S+TP S    N+  F++
Sbjct: 335 VQSGVPRRALNNKTPVGSTSATTSPAPPPTSTTPTSRREANMERFSR 381


>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
           1, isoform d protein.
          Length = 1106

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 135 VDGGRPRRRWCSGCGTGSISATTCRLERSRSSTPVS*LLLNIHLFTK 275
           V  G PRR   +    GS SATT       S+TP S    N+  F++
Sbjct: 479 VQSGVPRRALNNKTPVGSTSATTSPAPPPTSTTPTSRREANMERFSR 525


>AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin
           protein.
          Length = 953

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 135 VDGGRPRRRWCSGCGTGSISATTCRLERSRSSTPVS*LLLNIHLFTK 275
           V  G PRR   +    GS SATT       S+TP S    N+  F++
Sbjct: 326 VQSGVPRRALNNKTPVGSTSATTSPAPPPTSTTPTSRREANMERFSR 372


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 244 SCC*TYTCSQKVKL 285
           SCC T +CSQKV+L
Sbjct: 202 SCCKTVSCSQKVEL 215


>DQ178635-1|ABD75714.1|  361|Caenorhabditis elegans tetraspanin
           family protein protein.
          Length = 361

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 244 SCC*TYTCSQKVKL 285
           SCC T +CSQKV+L
Sbjct: 90  SCCKTVSCSQKVEL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,712,107
Number of Sequences: 27780
Number of extensions: 138630
Number of successful extensions: 340
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)