Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E18
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24450.1 68416.m03068 copper-binding family protein similar t...    29   1.3  
At5g52050.1 68418.m06460 MATE efflux protein-related contains Pf...    28   2.3  
At3g50250.1 68416.m05495 hypothetical protein predicted protein,...    27   5.2  
At3g61780.1 68416.m06931 expressed protein ; expression supporte...    26   9.1  

>At3g24450.1 68416.m03068 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 140

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 369 LAMHIYGCNKKIRERNCNLLSLHKWQKVE 283
           ++MH YGC KK+ E++ + L    W KVE
Sbjct: 80  VSMHCYGCAKKV-EKHISKLDGVTWYKVE 107


>At5g52050.1 68418.m06460 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 505

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 252 LNIHLFTKSETLPFAICVMTISYSSVRESFY 344
           L ++L T+S+TLP +IC +  S+  +  +F+
Sbjct: 175 LRVYLRTQSKTLPLSICTVIASFLHLPITFF 205


>At3g50250.1 68416.m05495 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 148

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 147 RPRRRWCSGCGTGSISATTCRLERSRSSTP 236
           R RRRW SG G G   A    + R R   P
Sbjct: 35  RRRRRWLSGDGDGGCPAVAAAVFRQRRWLP 64


>At3g61780.1 68416.m06931 expressed protein ; expression supported
           by MPSS
          Length = 1121

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 366 AMHIYGCNKKIRERNCNLLSLHKW 295
           AM + G  KK+ + N  L  LH+W
Sbjct: 718 AMFLQGLEKKVEKENEKLSHLHQW 741


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,150,444
Number of Sequences: 28952
Number of extensions: 122463
Number of successful extensions: 312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)