Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E17
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   188   4e-49
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   187   5e-49
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   2.1  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   6.5  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    24   8.6  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  188 bits (457), Expect = 4e-49
 Identities = 86/126 (68%), Positives = 101/126 (80%)
 Frame = +3

Query: 45  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 224
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 404
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 405 IPGLTD 422
           IPGLTD
Sbjct: 121 IPGLTD 126


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  187 bits (456), Expect = 5e-49
 Identities = 85/126 (67%), Positives = 101/126 (80%)
 Frame = +3

Query: 45  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 224
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 404
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 405 IPGLTD 422
           IPGLTD
Sbjct: 121 IPGLTD 126


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 289 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 206
           EWP  +K   +LLVRT  +   PC + P
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 267 LLMSKGHSCYRPRRDGERKRKSVRGCIVD 353
           ++ SK +S  +P+  G  KRK+ R  +VD
Sbjct: 97  VVTSKKNSRSKPKNGGASKRKASRRTVVD 125


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 87  LFEVVDEHKLRIFYEKRMGAEVDADLLGDEW 179
           +FE V EH L   Y+K +  ++D  L+   W
Sbjct: 349 VFEYVLEHTLPHLYQKIIELDMDLKLITINW 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,109
Number of Sequences: 5004
Number of extensions: 31842
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)