Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E17
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   203   4e-53
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    27   5.6  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical p...    27   7.4  
AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z54216-9|CAN86906.1|  155|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z54216-8|CAA90948.1|  101|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    26   9.8  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    26   9.8  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  203 bits (496), Expect = 4e-53
 Identities = 93/126 (73%), Positives = 107/126 (84%)
 Frame = +3

Query: 45  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 224
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 404
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 405 IPGLTD 422
           I GLTD
Sbjct: 121 IEGLTD 126


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 186 NLSIRRLEDLHQLQRPYAFHRRY 118
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 186 NLSIRRLEDLHQLQRPYAFHRRY 118
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 262 TRLLVRTPCFIGKPCLSLPPATRR 191
           TR +    CF+G+ C   PP TR+
Sbjct: 37  TRTMPIKKCFLGENCFERPPFTRK 60


>Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 144 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 46
           RP     +     HP LQ T  +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203


>U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical
           protein C45G9.6a protein.
          Length = 542

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 354 HQQCNHEQTCVSSHRHDVVCSKSGLLTSRDVHGC*SGLPVS*GSPACRY 208
           H+QC +   C+S  R    C+ +G    RD+  C + +  + GS  C Y
Sbjct: 417 HRQCLYHSDCISGQR----CTPTG----RDIATCETDISATIGSIQCFY 457


>U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK418.11 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 359 PFSLSPGHCPQRC 397
           P S +PG CPQRC
Sbjct: 13  PKSCNPGECPQRC 25


>AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 144 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 46
           RP     +     HP LQ T  +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203


>Z54216-9|CAN86906.1|  155|Caenorhabditis elegans Hypothetical
           protein T24H10.7d protein.
          Length = 155

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 69  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 167
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 94  ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 127


>Z54216-8|CAA90948.1|  101|Caenorhabditis elegans Hypothetical
           protein T24H10.7c protein.
          Length = 101

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 69  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 167
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 40  ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 73


>Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical
           protein T24H10.7b protein.
          Length = 299

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 69  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 167
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 238 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 271


>Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical
           protein T24H10.7a protein.
          Length = 319

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 69  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 167
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 258 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 291


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 345 CNHEQTCVSSHRHDVVCS-KSGLLTSRDVHGC*SGLPVS*GSPACRYRRQHG 193
           C ++ TC+ +  H  VC  K+G +  R    C    P+  G   C  R + G
Sbjct: 413 CENDGTCMHTSDHSPVCQCKNGFIGKR----CEKECPIGFGGVRCDLRLEIG 460


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 345 CNHEQTCVSSHRHDVVCS-KSGLLTSRDVHGC*SGLPVS*GSPACRYRRQHG 193
           C ++ TC+ +  H  VC  K+G +  R    C    P+  G   C  R + G
Sbjct: 413 CENDGTCMHTSDHSPVCQCKNGFIGKR----CEKECPIGFGGVRCDLRLEIG 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,655,886
Number of Sequences: 27780
Number of extensions: 193956
Number of successful extensions: 440
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)