Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E17
(426 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 171 2e-43
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 170 3e-43
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi... 29 1.7
At4g24170.1 68417.m03468 kinesin motor family protein contains P... 28 3.0
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 27 4.0
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH... 27 5.3
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 27 5.3
At4g14160.3 68417.m02185 transport protein, putative similar to ... 27 7.0
At4g14160.2 68417.m02186 transport protein, putative similar to ... 27 7.0
At4g14160.1 68417.m02184 transport protein, putative similar to ... 27 7.0
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc... 26 9.3
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 171 bits (416), Expect = 2e-43
Identities = 81/128 (63%), Positives = 98/128 (76%), Gaps = 2/128 (1%)
Frame = +3
Query: 45 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 224
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 398
FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
Query: 399 QEIPGLTD 422
++PGLTD
Sbjct: 121 NDLPGLTD 128
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 170 bits (414), Expect = 3e-43
Identities = 80/128 (62%), Positives = 98/128 (76%), Gaps = 2/128 (1%)
Frame = +3
Query: 45 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 224
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 398
FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120
Query: 399 QEIPGLTD 422
++PGLTD
Sbjct: 121 SDLPGLTD 128
>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1155
Score = 28.7 bits (61), Expect = 1.7
Identities = 21/94 (22%), Positives = 43/94 (45%)
Frame = +3
Query: 84 KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 263
K E +++R+ +R AE+ +LLG + K LR G D+ + Q + +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654
Query: 264 RLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 365
+ + G + Y D ++ +K D+ L+
Sbjct: 655 -MEIDSGKNLY---ADSDQPKKRSNDLATDSRLN 684
>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1004
Score = 27.9 bits (59), Expect = 3.0
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 159 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 326
DL G E L AG K+G + + +LT V +SKG + + P RD + R
Sbjct: 231 DLAGSERASQTLS-AGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTR 285
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 81 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 176
+KL+ EV DE KLR+ YE++ D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
(CHX20) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 842
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -1
Query: 210 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 37
Y+ G H R+L+DL Q R AC H P ++S I L R+T LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 66 PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 233
P CQ + V D + FYEK G E+ E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
>At4g14160.3 68417.m02185 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 620
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 368 LSPGHCPQRCTG 403
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 368 LSPGHCPQRCTG 403
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 368 LSPGHCPQRCTG 403
+ PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275
>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
polycomb-group protein identical to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 902
Score = 26.2 bits (55), Expect = 9.3
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -2
Query: 152 NFSAHTLFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSLRTSAMKP 6
N + +L +D E L F L RC V + +LH C Q L A KP
Sbjct: 253 NQAESSLLNKDMEGAL-DSFDNLFCRRCLVFDCRLHGCSQDLIFPAEKP 300
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,169,279
Number of Sequences: 28952
Number of extensions: 182354
Number of successful extensions: 406
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -