Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E16
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   155   3e-39
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   152   2e-38
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    36   0.003
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   0.86 
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.6  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   3.5  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   4.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   4.6  
SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    25   4.6  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   6.1  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   8.0  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  155 bits (375), Expect = 3e-39
 Identities = 75/105 (71%), Positives = 86/105 (81%)
 Frame = +3

Query: 45  SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHV
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHV 171

Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
           DM  ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 172 DMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  152 bits (369), Expect = 2e-38
 Identities = 72/105 (68%), Positives = 86/105 (81%)
 Frame = +3

Query: 45  SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHV
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHV 171

Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
           +M+ ++L  N+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 172 EMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 35.5 bits (78), Expect = 0.003
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = +3

Query: 48  ESLIKQIPRLLGPGLNKAGKFPGLLSHQ----ESMTQKIDEVKGTIKFQMKKVLCLSVAV 215
           + +I  +PR+LG    +  K P  +       E + +++    G   F         +  
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKISKGTAEQLKREVVSAYGATYFNSAPCSSFMIKC 203

Query: 216 GHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 335
           GHV  T  ELA+NV   + F+   ++    + + S+H+K++
Sbjct: 204 GHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = +3

Query: 141  TQKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKK 296
            T++I+   GT+          V  LS+A+G+++  P  L      N H+S+  L  L+K 
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741

Query: 297  HW 302
            H+
Sbjct: 2742 HY 2743


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 185 EEGVVPVCGRRSRRHDSR*TCPKCAPFN 268
           E  V  +C ++ R  +S   CP C P +
Sbjct: 95  ESNVCSMCSKQERTFESEAFCPSCYPLD 122


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 194 HLLHLEFDGSLDFINFLC 141
           HL     DG LDFIN +C
Sbjct: 609 HLASEGLDGELDFINVIC 626


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 241 SSGVMST*PTATDRHNTFFIWNLMVPLTSSIFC 143
           S+G   +  T T+R   F  WN+++   +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 45   SESLIKQIPRLLGPGLNKA-GKFPGLLSHQESMTQKIDEVKGTI-KFQMKKVLCLSVAVG 218
            S+ ++    R++G    K    F  +++   S    +DE++ +  K +  ++LC  VA G
Sbjct: 1733 SQLVLHGFQRVIGDNPVKGVAAFQPVIAALVSYINSLDEIQFSRGKSEFYQLLCAIVACG 1792

Query: 219  HVD 227
            H+D
Sbjct: 1793 HID 1795


>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 368 VNLIQSLGWSHCRLHMQRAHIL 303
           + + QSLGW    +H+   HIL
Sbjct: 74  LGITQSLGWEMYEVHVPEPHIL 95


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 231 TPDELAQNVHLSINFLVSLL 290
           TPD LA+N  LSI F+ + L
Sbjct: 645 TPDLLAKNKELSIGFVTATL 664


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 377 IYCVNLIQSLGWSHCRLHMQRAHILPVLL 291
           I CVNL+   GW      M    +L +LL
Sbjct: 90  IQCVNLLYKHGWREAHNEMLTMQLLLMLL 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,215
Number of Sequences: 5004
Number of extensions: 32505
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)