Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E16
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 139 9e-34
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 138 2e-33
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 134 3e-32
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 130 6e-31
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 50 1e-06
04_04_0401 - 24946801-24947562 44 6e-05
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 30 0.83
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547... 29 1.4
02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090 23 3.9
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 27 4.4
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 27 4.4
01_05_0390 - 21720118-21720573,21720667-21721296,21721427-217217... 27 4.4
01_05_0389 + 21716056-21716191,21716275-21716597,21716889-217175... 27 4.4
09_06_0028 + 20328599-20328821,20330659-20330735,20330806-203309... 27 7.7
05_07_0277 - 28909502-28909621,28910053-28910583,28910629-289107... 27 7.7
02_02_0231 - 8091431-8092900 27 7.7
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 139 bits (336), Expect = 9e-34
Identities = 63/105 (60%), Positives = 85/105 (80%)
Frame = +3
Query: 45 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 166
Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
M ++ QN+ +S+NFLVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 167 SMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPYRVF 211
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 138 bits (334), Expect = 2e-33
Identities = 63/105 (60%), Positives = 85/105 (80%)
Frame = +3
Query: 45 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++
Sbjct: 130 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 184
Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
M ++ QN+ +S+NFLVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 185 SMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 229
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 134 bits (324), Expect = 3e-32
Identities = 63/105 (60%), Positives = 83/105 (79%)
Frame = +3
Query: 45 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG+
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNC 166
Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMG R++
Sbjct: 167 AMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVYRVF 211
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 130 bits (313), Expect = 6e-31
Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 22/127 (17%)
Frame = +3
Query: 45 SESLIKQIPRLLGPGLNKAGK----------------------FPGLLSHQESMTQKIDE 158
SE++IKQIPRLLGPGLNKAGK FP L++HQES+ K++E
Sbjct: 112 SEAIIKQIPRLLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNE 171
Query: 159 VKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTM 338
K T+KFQ+KKVLC+ VAVG+ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 172 TKATVKFQLKKVLCMGVAVGNCAMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTM 231
Query: 339 GPPQRLY 359
G R++
Sbjct: 232 GKVIRVF 238
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +3
Query: 51 SLIKQIPRLLGPGLNKAGKFPGLLSHQES-MTQKIDEVKGTIKFQMKKVLCLSVAVGHVD 227
+++ +PR+LG K P + + +++ +V + ++ C + VG +D
Sbjct: 145 AVLPLLPRVLGKAFYSTKKAPVAVDFARTGWLEQVRKVMNSTFLYLRTGTCSGIKVGRLD 204
Query: 228 MTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 332
M ++ +NV ++ V + K W NVRSLH+K+
Sbjct: 205 MKEEDTVENVMAAVEAAVENVPKKWANVRSLHLKA 239
>04_04_0401 - 24946801-24947562
Length = 253
Score = 43.6 bits (98), Expect = 6e-05
Identities = 22/93 (23%), Positives = 44/93 (47%)
Frame = +3
Query: 81 GPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVH 260
G KA + + ++ + E ++ +++ C +V VGH M +E +NV
Sbjct: 113 GKAAAKAARVVPVDLADQAWAESAREAARRVELRVEGGTCRAVRVGHAAMAREEAVENVV 172
Query: 261 LSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
++ + + + W+NVR+LH+K+ LY
Sbjct: 173 AAVEAAAACVPRKWRNVRALHVKAPESVALPLY 205
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 29.9 bits (64), Expect = 0.83
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 243 LAQNVHLSINFLVSLLKKH 299
+ + VHLS+NF++ L+KKH
Sbjct: 302 IVEGVHLSLNFVMGLMKKH 320
>09_06_0364 +
22554082-22554225,22554306-22554520,22554671-22554752,
22554976-22555371,22555553-22556293,22556420-22556551,
22556981-22557367
Length = 698
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY*INTINLTLVSQKKK 404
D + + VHLS+NF++ L++KH + + S G + + +TL K K
Sbjct: 262 DRKESVVVEGVHLSLNFVMGLMRKHPSIIPFMIYISDEGKHTERFAVRAKYMTLDPTKNK 321
>02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090
Length = 625
Score = 23.4 bits (48), Expect(2) = 3.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -3
Query: 283 DTRKLIERCTFWASSSGV 230
D+++ + RCT W G+
Sbjct: 101 DSKEFVRRCTSWQRQGGI 118
Score = 22.6 bits (46), Expect(2) = 3.9
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = -3
Query: 355 NLWGGPIVDFICRERTFCQCFLSSDTRKLIERC 257
++W + +C + +C + + K+IERC
Sbjct: 38 HIWDETYLYRVCSDGLLRRCVPTDEGLKIIERC 70
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 68 SASPWSWSQ*GWQVPWSLIP 127
SA WSW GW VP + P
Sbjct: 273 SAFAWSWGPLGWLVPSEIFP 292
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 57 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 176
++ + +LG N K+ LL + + KIDE++ ++K
Sbjct: 289 VENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLK 328
>01_05_0390 -
21720118-21720573,21720667-21721296,21721427-21721749,
21721844-21721973
Length = 512
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 68 SASPWSWSQ*GWQVPWSLIP 127
SA WSW GW VP + P
Sbjct: 397 SAFAWSWGPLGWLVPSEIFP 416
>01_05_0389 +
21716056-21716191,21716275-21716597,21716889-21717518,
21717602-21718054
Length = 513
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 68 SASPWSWSQ*GWQVPWSLIP 127
SA WSW GW VP + P
Sbjct: 399 SAFAWSWGPLGWLVPSEIFP 418
>09_06_0028 +
20328599-20328821,20330659-20330735,20330806-20330968,
20331095-20331156,20331250-20331328,20331818-20331898,
20332068-20332216,20332254-20332319,20332495-20332643,
20332722-20332761,20333001-20333015
Length = 367
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 316 ERTFCQCFLSSDTRKLIERCTFWASSSGVM 227
E T C CFL D RC F AS+ V+
Sbjct: 336 ETTICMCFLEMDKLLHRLRCIFVASAGHVV 365
>05_07_0277 -
28909502-28909621,28910053-28910583,28910629-28910721,
28910758-28911501
Length = 495
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 245 CPKCAPFNQLPCVAT*EALAECALS----AYEVDNGTTPEI 355
C K P QLP + T E A+S A+ DNGT P +
Sbjct: 313 CQKLPPLGQLPLLKTAEINGMSAVSIIDDAFYGDNGTFPSL 353
>02_02_0231 - 8091431-8092900
Length = 489
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 251 LGKFIWSHVDVTDGHRQAQHLLHLEFDGSLDFINFLCHGFLVG*ETRELASLIE 90
+G F+ S D G L L+ GS+ F++F G L +TRELA+ +E
Sbjct: 256 VGPFVRSSSDEA-GESACLEWLDLQPAGSVVFVSFGSFGVLSVEQTRELAAGLE 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,862,034
Number of Sequences: 37544
Number of extensions: 223261
Number of successful extensions: 551
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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