Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E16
(411 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4) 83 9e-17
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.16
SB_42576| Best HMM Match : VlpA_repeat (HMM E-Value=8.1) 30 0.65
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.85
SB_49035| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3) 27 6.0
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 27 6.0
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 27 6.0
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
Length = 81
Score = 83.0 bits (196), Expect = 9e-17
Identities = 36/50 (72%), Positives = 45/50 (90%)
Frame = +3
Query: 45 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKV 194
S+SLIKQIPR+LGPGLNKAGKFP ++H E+M QKI++V+ TIKFQMKK+
Sbjct: 28 SDSLIKQIPRILGPGLNKAGKFPTPINHNENMVQKIEDVRSTIKFQMKKI 77
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 32.3 bits (70), Expect = 0.16
Identities = 11/44 (25%), Positives = 27/44 (61%)
Frame = +3
Query: 204 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 335
++ VGH E+ N+ +++ L ++ + W N++SL++K++
Sbjct: 322 AMKVGHTGQEKKEVISNIVEAVSGLAKIIPRGWNNIQSLNIKTS 365
>SB_42576| Best HMM Match : VlpA_repeat (HMM E-Value=8.1)
Length = 325
Score = 30.3 bits (65), Expect = 0.65
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 63 QIPRLLGPGLNKAGKFPGLLS--HQESMTQKIDEVKGTIKFQMKKV 194
+IP P +K K+PG ++ HQ + E GTI MK +
Sbjct: 30 EIPGYYQPCTSKTSKYPGTMNLVHQRHRNTRTSEYPGTINLVMKDI 75
>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 29.9 bits (64), Expect = 0.85
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 117 LLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKK 296
L+ ++ ++++ +K + KKV S AV + TPD ++ V +N L SL KK
Sbjct: 629 LIGLKDGGDKELNRLKEELTQVSKKV---SSAVSEMSDTPDNVSNQVEKVVNELKSLKKK 685
Query: 297 H 299
H
Sbjct: 686 H 686
>SB_49035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 292 LSSDTRKLIERCTFWASSSGVMST*PTATDRHNTFFIWNLMVPLTSSIFCVMDS 131
L +D+ L+ CT + S + T T +T + + +P+T S V DS
Sbjct: 95 LVTDSTILVTDCTILVTDSTIPVTDSTIPVTDSTILVTDSTIPVTDSTILVTDS 148
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 187 RRCCACLWPSVTST*-LQMNLPKMCTFQSTSLCRYLRSTGRMCALCI 324
R+C CL V S + + + +CT +C RS R CA C+
Sbjct: 193 RQCAPCLGHYVASVHHVYVVILPVCTMFMLPVCTMFRSLCRQCAPCL 239
>SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)
Length = 604
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 263 KVHILGKFIWSHVDVTDGHRQAQHLLHLEFDGSL 162
K +LG +W++ DG + ++H+ DG L
Sbjct: 523 KTELLGMRVWNYNKSLDGTFRGAKIVHVSLDGKL 556
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 261 GAHFGQVHLESCRRDRRPQTGTTPSSF 181
G G H E CR D P+T T+ + +
Sbjct: 167 GTESGDDHFEDCRDDSPPETSTSTTRY 193
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 261 GAHFGQVHLESCRRDRRPQTGTTPSSF 181
G G H E CR D P+T T+ + +
Sbjct: 207 GTESGDDHFEDCRDDSPPETSTSTTRY 233
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 26.6 bits (56), Expect = 7.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 328 FICRERTFCQC---FLSSDTRKLIERCTFWASSSGVMST*PTATDRHNTFFIWNLMVPLT 158
F+ + TF FLSSDT L TF +S + +S+ T +TF + +
Sbjct: 262 FLSSDTTFLSSDTIFLSSDTTLLSSDSTFLSSDTTFLSSDTTLLSSDSTFLSSDTTFSSS 321
Query: 157 SSIFCVMDS 131
S F D+
Sbjct: 322 DSTFVSSDT 330
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 111 PGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS 206
P L+ + +S+T KIDE++ + +V+C++
Sbjct: 917 PFLICNAQSLTNKIDELECVVLSNSARVVCVT 948
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,507,209
Number of Sequences: 59808
Number of extensions: 252705
Number of successful extensions: 630
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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