Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E16
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   0.77 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   0.77 
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   4.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   9.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.5  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 90  LNKAGKFPGLLSHQE 134
           LNK GK P L++H+E
Sbjct: 573 LNKIGKNPNLVAHRE 587


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 90  LNKAGKFPGLLSHQE 134
           LNK GK P L++H+E
Sbjct: 541 LNKIGKNPNLVAHRE 555


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 216 GHVDMTPDELAQNVHLSINFLVS 284
           G  ++TPD+  ++VH  I   VS
Sbjct: 79  GTRELTPDDFTEDVHEIIEQCVS 101


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 216 GHVDMTPDELAQNVHLSINFLVS 284
           G  ++TPD+  ++VH  I   VS
Sbjct: 79  GTRELTPDDFTEDVHEIIEQCVS 101


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 255 HFGQVHLESCRRDRRPQTGTTPSSFGI 175
           H GQ+HL       + Q G  P  +G+
Sbjct: 908 HQGQIHLTVAVVQYKTQDGFGPIHYGV 934


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 350 LGWSHCRLHMQRAHIL 303
           LGW H   +   +HIL
Sbjct: 295 LGWGHTSFNGMLSHIL 310


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 78  LGPGLNKAGKF 110
           L PG NK GKF
Sbjct: 238 LEPGTNKNGKF 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,261
Number of Sequences: 438
Number of extensions: 2361
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)