Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E16
(411 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 165 8e-42
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 165 8e-42
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 165 1e-41
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 163 5e-41
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 53 7e-08
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 50 5e-07
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 44 3e-05
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 32 0.13
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 0.70
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 0.92
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 0.92
At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein ... 28 2.8
At4g02200.2 68417.m00295 drought-responsive family protein simil... 27 4.9
At4g02200.1 68417.m00294 drought-responsive family protein simil... 27 4.9
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 27 4.9
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 27 4.9
At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) famil... 27 6.5
At4g21480.1 68417.m03106 glucose transporter, putative similar t... 26 8.6
At3g55400.1 68416.m06153 methionyl-tRNA synthetase / methionine-... 26 8.6
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 165 bits (402), Expect = 8e-42
Identities = 74/105 (70%), Positives = 92/105 (87%)
Frame = +3
Query: 45 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNL 171
Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 172 SMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 165 bits (402), Expect = 8e-42
Identities = 74/105 (70%), Positives = 92/105 (87%)
Frame = +3
Query: 45 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNL 171
Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 172 SMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 165 bits (401), Expect = 1e-41
Identities = 73/105 (69%), Positives = 92/105 (87%)
Frame = +3
Query: 45 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 171
Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 172 SMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 163 bits (395), Expect = 5e-41
Identities = 72/105 (68%), Positives = 91/105 (86%)
Frame = +3
Query: 45 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++
Sbjct: 113 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNL 172
Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPP R++
Sbjct: 173 SMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 53.2 bits (122), Expect = 7e-08
Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +3
Query: 54 LIKQIPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 230
+I +P+L+G ++ K P + + + ++I++ G F M+ C ++ V + M
Sbjct: 137 VIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFMRTGSCSAIKVAKLSM 196
Query: 231 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 329
D++ +NV ++N +V +L W+ +RSLH+K
Sbjct: 197 ESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 50.4 bits (115), Expect = 5e-07
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +3
Query: 54 LIKQIPRLLGPGLNKAGKFPGLLS-HQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 230
+I +PR++G + K P L + +I++ G+ F ++ C + VG + M
Sbjct: 157 IIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSM 216
Query: 231 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 329
E+ +NV ++N LV L W VRSLH+K
Sbjct: 217 DICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 44.4 bits (100), Expect = 3e-05
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +3
Query: 54 LIKQIPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 230
L+ +P+LLG K K P ++ + S ++I++ + F + C V V + M
Sbjct: 148 LMPMLPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFFVGTGTCSVVKVAKLSM 207
Query: 231 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 329
+E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 208 GRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 32.3 bits (70), Expect = 0.13
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Frame = +3
Query: 60 KQIPRL--LGPGLNKAGKFPGLL--SHQESMTQKIDEVK-GTIKFQMKKVLCLSVAVGHV 224
K +PR+ + LN G P S + +T+ + + K G KF+M K L V +G +
Sbjct: 287 KMMPRVYKISRILNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKM 346
Query: 225 DMTPDELAQNVHLSINFLV-----SLLK--KHWQNVRSLHMKSTMG 341
+ + L +NV +N L+ L K K+ V + H+ STMG
Sbjct: 347 SFSEEALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMG 392
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 0.70
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 243 LAQNVHLSINFLVSLLKKH 299
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 0.92
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 243 LAQNVHLSINFLVSLLKKH 299
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 0.92
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 243 LAQNVHLSINFLVSLLKKH 299
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 398
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 88 VSIRLASSLVSYPTRNP*HRKLMKSREPSNSK*RRCCAC 204
VS+ L + L + P N HR L+ + SN+K C C
Sbjct: 228 VSLHLNNVLTTTPNNNSNHRSLVVYGKGSNNKVHECGIC 266
>At4g02200.2 68417.m00295 drought-responsive family protein similar
to drought-induced mRNA, Di19 [Arabidopsis thaliana]
gi|469110|emb|CAA55321
Length = 207
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 170 HQIPNEEGVVPVCGRRSRRH 229
HQ+ G+ PVC RR + H
Sbjct: 65 HQLDANNGICPVCSRRVKMH 84
>At4g02200.1 68417.m00294 drought-responsive family protein similar
to drought-induced mRNA, Di19 [Arabidopsis thaliana]
gi|469110|emb|CAA55321
Length = 214
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 170 HQIPNEEGVVPVCGRRSRRH 229
HQ+ G+ PVC RR + H
Sbjct: 65 HQLDANNGICPVCSRRVKMH 84
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 349 WGGPIVDFICRERTFCQCFLSSDTRKLIERCTFWASSSGVM 227
+G P+V I FC+ LSS R+ I C + G M
Sbjct: 182 YGNPLVKAIPEGDWFCRQCLSSKNREKIFSCCLCTTKGGAM 222
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 349 WGGPIVDFICRERTFCQCFLSSDTRKLIERCTFWASSSGVM 227
+G P+V I FC+ LSS R+ I C + G M
Sbjct: 182 YGNPLVKAIPEGDWFCRQCLSSKNREKIFSCCLCTTKGGAM 222
>At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) family
protein contains similarity to Swiss-Prot:Q9P926 nuclear
transport factor 2 (NTF-2) [Candida albicans]
Length = 334
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 287 T*EALAECALSAYEVDNGTTPEIV 358
T EALA C L +Y ++ G PE+V
Sbjct: 28 TSEALANCFLQSYFLNLGVYPEVV 51
>At4g21480.1 68417.m03106 glucose transporter, putative similar to
glucose transporter (Sugar carrier) STP1, Arabidopsis
thaliana, SP|P23586; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 508
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 68 SASPWSWSQ*GWQVPWSLIP 127
+A WSW GW VP + P
Sbjct: 397 AAFAWSWGPLGWLVPSEIFP 416
>At3g55400.1 68416.m06153 methionyl-tRNA synthetase /
methionine--tRNA ligase / MetRS (cpMetRS) identical to
methionyl-tRNA synthetase MEtRS [Arabidopsis thaliana]
GI:2266985
Length = 616
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 254 CAPFNQLPCVAT*EALAECALSAYE 328
C P +Q+PCVA E ALS Y+
Sbjct: 210 CCPVHQMPCVARKEDNYFFALSKYQ 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,812,350
Number of Sequences: 28952
Number of extensions: 179511
Number of successful extensions: 476
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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