Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E15
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   2.0  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   2.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   3.4  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    24   6.0  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    24   7.9  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   7.9  

>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 185 KFKLTAGKFYNDAEADKGLQTSEDARFYALSRKFKPFSNEGKPLVVQ 325
           K  LT    Y++   D G+       FY +     P S   +PLVV+
Sbjct: 578 KTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVK 624


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 237 VYRHLKTRGSTPYRGNSSHSA 299
           ++R LKTRG+TP  G   HS+
Sbjct: 338 LFRALKTRGNTPKYGIIYHSS 358


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 200 AGKFYNDAEADKGLQTSEDARFYALSRKFKPFSNE 304
           A  F + +E+ KGL +SE    Y+L     P SN+
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQ 296


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -2

Query: 170 RGVHYI--PNLIPMNRLRIFPQRTLHNLLTKLP-INWQ*PALQISFFNSQQAPSLSKPR 3
           R  H+I  PNL     L+  P+ T HN LT    +  Q     +S     ++P    PR
Sbjct: 348 RNGHHISDPNLNSSISLKFAPEDTAHNSLTSQENVGPQVTTTSLSNMTVAESPRTDTPR 406


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/48 (18%), Positives = 24/48 (50%)
 Frame = +2

Query: 116 EKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDA 259
           + F +D  + +W   EH  K   ++   + + +++ + D+  + SE +
Sbjct: 49  QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSEGD-DEPFEVSESS 95


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 152 PNLIPMNRLRIFPQRTLHNLLTKLPIN 72
           P+  P+ R+R F +  LH+ + ++ I+
Sbjct: 79  PHFFPIKRIRPFHENPLHSFVYRIMIS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,141
Number of Sequences: 5004
Number of extensions: 28521
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)