Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E15
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   5e-30
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      28   1.9  
SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)              28   1.9  
SB_28899| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)                      27   4.4  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_45263| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0026)               27   5.8  
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.8  
SB_44040| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score =  126 bits (304), Expect = 5e-30
 Identities = 60/87 (68%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
 Frame = +2

Query: 95   NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 274
            N  V F EKF D SWE  WV S   G + GKFK TAGKFY DAEADKG+QTSEDA+FY +
Sbjct: 753  NPVVHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGI 812

Query: 275  SRKF-KPFSNEGKPLVVQFSVKHEQDI 352
            S KF KPF+NEGK LV+QFSVKHEQ+I
Sbjct: 813  SAKFEKPFTNEGKTLVIQFSVKHEQNI 839


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 348 SCSCFTLNCTTKGLP-SLLNGLNFLDRA 268
           SC CF + C+ + +P S+L  +++L RA
Sbjct: 154 SCRCFPITCSCRCVPQSMLMSMSYLSRA 181


>SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)
          Length = 735

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 255 TRGSTPYRGNSSHSAMKANLWW 320
           T+G   Y GNS+H+  K NL W
Sbjct: 90  TQGGIIYLGNSAHAVKKLNLIW 111


>SB_28899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 255 TRGSTPYRGNSSHSAMKANLWW 320
           T+G   Y GNS+H+  K NL W
Sbjct: 90  TQGGIIYLGNSAHAVKKLNLIW 111


>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
          Length = 895

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 233 YPPLRHCRTFQQSI*TCRILFRGVHYIPNL 144
           +P LRHC+T+Q ++    +L  G+  + NL
Sbjct: 503 FPGLRHCKTYQSAL----LLLHGIPVVYNL 528


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 321  TTKGLPSLLNGLNFLDRA*NLASSDVCKPLSASA 220
            TT+GLPS ++ +N  +   NL S    KP   S+
Sbjct: 960  TTQGLPSKISSVNLTEALSNLISISWSKPSDGSS 993


>SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 219 TQRRIKVYRHLKTRGSTPYRGNSSHSAM 302
           TQR +   RH+ TR    +   S HS M
Sbjct: 470 TQRHVTTQRHVTTRRQVTHNVRSQHSVM 497


>SB_45263| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0026)
          Length = 123

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 101 EVFFEEKFSD--DSWE-SNWVYSEHPGKEFGKFKLTAGK 208
           E FF E+ S+  D W    W+ SE P K+ G    + G+
Sbjct: 82  EDFFMERVSNYRDGWGIEKWMVSEQPHKDTGTIDFSTGQ 120


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = -1

Query: 306 PSLLNGLNFLDRA*NLASSDVCKPLSASASL*NFPAVNLNLPNSFPGCSLYTQFDSHESS 127
           P  LN    LDR+         +P S++A L +     L  P+     S        +S 
Sbjct: 537 PESLNTGGSLDRSRKKPLPGQPRPASSAADLYSSKQQRLQ-PSYHRPTSFQANGQREDSP 595

Query: 126 ENFSSKNTSQFIDEIANKLA 67
               S + S+F+ ++ANKLA
Sbjct: 596 SKPRSPSHSEFLQQVANKLA 615


>SB_44040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 249 LKTRGSTPYRGNSSH 293
           L TRG  PY+GN++H
Sbjct: 120 LPTRGQRPYQGNTAH 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,104,648
Number of Sequences: 59808
Number of extensions: 210754
Number of successful extensions: 522
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)