Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E15
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   107   3e-24
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   107   3e-24
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   1.2  
U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astaci...    27   3.8  
AF022976-2|AAC69081.1|  146|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF273806-1|AAG15155.1|  395|Caenorhabditis elegans nuclear recep...    26   6.6  
AF022976-15|AAO26008.1|  324|Caenorhabditis elegans Nuclear horm...    26   6.6  
AF022976-14|AAC69077.1|  393|Caenorhabditis elegans Nuclear horm...    26   6.6  
AF047656-12|AAC05111.1|  168|Caenorhabditis elegans Hypothetical...    26   8.7  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  107 bits (256), Expect = 3e-24
 Identities = 48/87 (55%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
 Frame = +2

Query: 95  NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 274
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 275 SRKF-KPFSNEGKPLVVQFSVKHEQDI 352
           + KF K FSN+GK LV+Q++VKHEQ I
Sbjct: 73  AAKFDKDFSNKGKTLVIQYTVKHEQGI 99


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  107 bits (256), Expect = 3e-24
 Identities = 48/87 (55%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
 Frame = +2

Query: 95  NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 274
           + EV+F+E+F+D SWE  WV S+H   +FG FKL+AGKF++    D+G+QTS+DA+FY+ 
Sbjct: 14  SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSR 72

Query: 275 SRKF-KPFSNEGKPLVVQFSVKHEQDI 352
           + KF K FSN+GK LV+Q++VKHEQ I
Sbjct: 73  AAKFDKDFSNKGKTLVIQYTVKHEQGI 99


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 224 EADKGLQTSEDARFYALSRKFK-PFSNEGKPLVVQFSVKHEQ 346
           E D GL     AR +A++ K   PF+ +    VVQ+ +K E+
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEE 148


>Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK792.8 protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 171 PGCSLYTQFDSHESSEN-FSSKNTSQFID 88
           P C+L  QF+S E  +N     N SQFID
Sbjct: 443 PSCALCFQFESREQFDNDMRQLNLSQFID 471


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
           protein F55F10.1 protein.
          Length = 4368

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 156 YTQFDSHESSENFSSKNTSQFIDEIANKLAIASTADFI 43
           +T+F     ++NF SKN  +FID +   L+     D++
Sbjct: 437 FTKFYMEVFTKNFDSKNNQKFIDNLEKCLSSGRFKDYL 474


>U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astacin
            protease protein39 protein.
          Length = 951

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 352  DVLFVLHTELYHQRFAFIAEWLEFPR*GVEPRVF 251
            ++L ++HT+   +   F+AE+ E PR     R F
Sbjct: 900  ELLLIMHTDNAEEEKGFVAEYREAPRSSSTKRTF 933


>AF022976-2|AAC69081.1|  146|Caenorhabditis elegans Hypothetical
           protein R11G11.6 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 156 YTQFDS-HESSENFSSKNTSQFIDEIAN 76
           YT +    + +ENF SKNT+Q I ++++
Sbjct: 67  YTAYTKKQQDNENFMSKNTTQIISQLSS 94


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical protein
            F01G4.3 protein.
          Length = 1266

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 195  NLNLPNSFPGCSLYTQFDSHES 130
            NLNLP SFP     T+FD H S
Sbjct: 1025 NLNLPQSFPARHC-TRFDEHFS 1045


>AF273806-1|AAG15155.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-58 protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 152 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 72
           P+  P MN+  +F     HN+ TK+P+N
Sbjct: 138 PSWTPHMNKGPLFKLANFHNVFTKMPVN 165


>AF022976-15|AAO26008.1|  324|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 58, isoform b protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 152 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 72
           P+  P MN+  +F     HN+ TK+P+N
Sbjct: 67  PSWTPHMNKGPLFKLANFHNVFTKMPVN 94


>AF022976-14|AAC69077.1|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 58, isoform a protein.
          Length = 393

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 152 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 72
           P+  P MN+  +F     HN+ TK+P+N
Sbjct: 136 PSWTPHMNKGPLFKLANFHNVFTKMPVN 163


>AF047656-12|AAC05111.1|  168|Caenorhabditis elegans Hypothetical
           protein F17E9.2 protein.
          Length = 168

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 137 WESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYALSRKFK 289
           WE + +  +H G  F  F   AG FY     D G   +E+  FY +  K +
Sbjct: 51  WEEDGLIDDHLGDTFLFFLSEAGAFYKIDVQDDGDGPNEN--FYRIYYKIE 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,346,507
Number of Sequences: 27780
Number of extensions: 160974
Number of successful extensions: 491
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)