Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E15
(354 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.81
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.81
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.81
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.81
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.81
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.81
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 0.81
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 0.81
AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein. 22 2.5
EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate isome... 21 5.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 20 7.5
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 20 9.9
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.81
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 287 KPFSNEGKPLVVQFSVKHEQDI 352
+P +NE +PL V+F + +Q I
Sbjct: 3 RPVANESEPLEVKFGITLQQII 24
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.81
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 287 KPFSNEGKPLVVQFSVKHEQDI 352
+P +NE +PL V+F + +Q I
Sbjct: 3 RPVANESEPLEVKFGITLQQII 24
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.81
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 287 KPFSNEGKPLVVQFSVKHEQDI 352
+P +NE +PL V+F + +Q I
Sbjct: 3 RPVANESEPLEVKFGITLQQII 24
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.81
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 287 KPFSNEGKPLVVQFSVKHEQDI 352
+P +NE +PL V+F + +Q I
Sbjct: 3 RPVANESEPLEVKFGITLQQII 24
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.81
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 287 KPFSNEGKPLVVQFSVKHEQDI 352
+P +NE +PL V+F + +Q I
Sbjct: 3 RPVANESEPLEVKFGITLQQII 24
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 0.81
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 287 KPFSNEGKPLVVQFSVKHEQDI 352
+P +NE +PL V+F + +Q I
Sbjct: 3 RPVANESEPLEVKFGITLQQII 24
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 0.81
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 287 KPFSNEGKPLVVQFSVKHEQDI 352
+P +NE +PL V+F + +Q I
Sbjct: 71 RPVANESEPLEVKFGITLQQII 92
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 0.81
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 287 KPFSNEGKPLVVQFSVKHEQDI 352
+P +NE +PL V+F + +Q I
Sbjct: 71 RPVANESEPLEVKFGITLQQII 92
>AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein.
Length = 122
Score = 21.8 bits (44), Expect = 2.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 328 ELYHQRFAFIAEW 290
ELYH +F + EW
Sbjct: 62 ELYHHKFFQVHEW 74
>EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate
isomerase protein.
Length = 247
Score = 20.6 bits (41), Expect = 5.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 138 HESSENFSSKNTSQFIDE 85
HE N+ SKN +Q + E
Sbjct: 184 HEKLRNWFSKNVNQTVAE 201
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 20.2 bits (40), Expect = 7.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 228 RIKVYRHLKTRGSTPYRGNSSHSAMKA 308
RIK L T +T ++ N SH ++
Sbjct: 676 RIKTTEKLSTDPNTHFQVNQSHGIKRS 702
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 19.8 bits (39), Expect = 9.9
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -1
Query: 153 TQFDSHESSENFSSKNTSQFIDEIANKL 70
T SH+ + ++S+F +++ NKL
Sbjct: 53 TLISSHDELPGHINCDSSKFEEDLMNKL 80
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,669
Number of Sequences: 438
Number of extensions: 1594
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8184330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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