Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E14
         (206 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4N585 Cluster: Putative uncharacterized protein; n=3; ...    31   6.8  
UniRef50_O18428 Cluster: Integrin; n=1; Geodia cydonium|Rep: Int...    30   9.0  
UniRef50_Q97YJ6 Cluster: Putative uncharacterized protein; n=1; ...    30   9.0  

>UniRef50_Q4N585 Cluster: Putative uncharacterized protein; n=3;
           cellular organisms|Rep: Putative uncharacterized protein
           - Theileria parva
          Length = 1552

 Score = 30.7 bits (66), Expect = 6.8
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 190 RRVFVRLGFSTFFSGEAFDFLLT-TRSLLRRIFTFYKLNDVTNSK 59
           R   +R  +STF      DF LT  +S +RRI + Y+L +V N K
Sbjct: 841 RGAIIRKKYSTFRKQRFEDFALTLVQSFIRRILSCYELLNVRNVK 885


>UniRef50_O18428 Cluster: Integrin; n=1; Geodia cydonium|Rep:
           Integrin - Geodia cydonium (Sponge)
          Length = 1086

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 205 ELCFLRRVFVRLGFSTFFSGEAFDFLLTTRSLLR 104
           E  F  RVFV+ G    FSG  FD  +T R  +R
Sbjct: 559 EQTFTDRVFVQNGILDIFSGFTFDLEITARDFVR 592


>UniRef50_Q97YJ6 Cluster: Putative uncharacterized protein; n=1;
           Sulfolobus solfataricus|Rep: Putative uncharacterized
           protein - Sulfolobus solfataricus
          Length = 596

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -2

Query: 160 TFFSGEAFDFL---LTTRSLLRRIFTFYKLNDVTNSKTERIQLFCSGKTKQPVSL 5
           TF+  +  DFL   LT  SLL +I  FY L  V+ SK+++   +   K    +++
Sbjct: 333 TFYEDQLSDFLRDRLTPGSLLGKISGFYDLKMVSGSKSKQFSSYDGSKKMLTINM 387


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,266,026
Number of Sequences: 1657284
Number of extensions: 2447620
Number of successful extensions: 5399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5398
length of database: 575,637,011
effective HSP length: 47
effective length of database: 497,744,663
effective search space used: 10452637923
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)