Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E14
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   1.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   2.4  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    24   2.4  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    24   2.4  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    23   5.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    23   5.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    23   7.3  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    23   7.3  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    23   7.3  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    22   9.6  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    22   9.6  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    22   9.6  

>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 127 LTTRSLLRRIFTFYKLNDVTNSKTERIQLFCSGKTKQ 17
           L ++  L R+  FY LND+   +T  I  F  G+ ++
Sbjct: 258 LVSKEELTRVHAFYSLNDL-KLETSTINTFMWGRVQE 293


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 139 FDFLLTTRSLLRRIFTFYKLN 77
           +DFL T  + L   FT+ KLN
Sbjct: 524 YDFLTTINATLYTFFTYKKLN 544


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 69  QILKPNAFNYSVVAKPNSQSASC 1
           +ILKP   N +V    NSQ  SC
Sbjct: 468 RILKPRKINKTVKIMSNSQRRSC 490


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -2

Query: 205 ELCFLRRVFVRLGFSTFFSGEAFDFLLTTRSLLRRIFTFYKLN 77
           +L ++ R+F  L     FS + +DFL+  +S   ++F  ++L+
Sbjct: 586 DLQYICRIFEHLKGGFMFSNKDYDFLIQLKS---KVFNRFQLS 625


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 198 ASYGVSSYVWDFQHFFPVRLLI 133
           AS+  ++ +WD +H  P+R+ +
Sbjct: 463 ASHDQTARLWDVEHAAPLRVFV 484


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 124 TTRSLLRRIFTFYKLNDVTNSKTERIQL 41
           +T S  + +  FY++ D+T S+ ER QL
Sbjct: 900 STYSHNQNVVMFYEVLDITLSELERKQL 927


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 172 LGFSTFFSGEAFDFLLTTRSLL 107
           LGF   + GE F+++    SLL
Sbjct: 455 LGFQLIYMGELFEYVPELNSLL 476


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 204 NFASYGVSSYVWDFQHF 154
           NFA YG   + W  +H+
Sbjct: 447 NFARYGCGDFDWAQEHY 463


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 133 NQKPHRKKMLKIPNVRRHAVGSKV 204
           +QK HR+ +L     RR   GSKV
Sbjct: 256 DQKNHRRDLLLAAAERRKQSGSKV 279


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 102 RRKSERVVNKKSKASPEKNVENP 170
           RRK  +V  + + A P  N  NP
Sbjct: 500 RRKPGQVAPQSTNAEPSNNQSNP 522


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 169 GFSTFFSGEAFDFLLTTRSLLRRIFTFYKLNDV 71
           G  +FF  E F    TT++LL+ +     ++D+
Sbjct: 591 GVLSFFCTERFVLFTTTKNLLKFVHLVSTVDDL 623


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 205 ELCFLRRVFVRLGFSTFFSGEAFDFLLTTRSLLRRIFTFYKLND 74
           E  F RR+F      +F   +  D   + RS +   + +Y+LND
Sbjct: 560 EWLFSRRLFQSALLYSFKVSDVDDSHFSFRSQILICWCYYRLND 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,243
Number of Sequences: 5004
Number of extensions: 11700
Number of successful extensions: 42
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)