Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E14
         (206 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0414 + 3262886-3262957,3264517-3264597,3265115-3265214,326...    27   1.6  
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159...    26   4.8  
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468           25   8.4  

>05_01_0414 +
           3262886-3262957,3264517-3264597,3265115-3265214,
           3265473-3265522,3265581-3265671,3266636-3266715,
           3266940-3267005,3267761-3267860,3267934-3268011,
           3268165-3268232,3268305-3268373,3268485-3268562,
           3269561-3269631,3270632-3270709,3270808-3270913,
           3271475-3271579,3272256-3272387,3272464-3272571,
           3272655-3272764,3272868-3272963,3273155-3273617
          Length = 733

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 121 TRSLLRRIFTFYKLNDVTNSKTERIQLFCSGKTKQPVSLV 2
           T+S   ++  F KL  +   K +  QL  SG+T Q +SLV
Sbjct: 486 TKSFWDQLVRFEKLGSIQAFKLKYQQLMESGETTQSISLV 525


>11_06_0361 -
           22711200-22712180,22712523-22712729,22715205-22715903,
           22717848-22717979,22720422-22721180,22721241-22721453
          Length = 996

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 205 ELCFLRRVFVRLGFSTFFSGEAFDFLLTTRSLLRRIFTFYKLNDVTNSKTERI 47
           ++ F+   F RL   T F G+   F ++    L R+      +DVTN   ER+
Sbjct: 730 KIVFMSIDFSRLRSLTVF-GKWESFFISDNMKLLRVLDLENASDVTNDDLERV 781


>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
          Length = 1078

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 133 NQKPHRKKMLKIPNVRRHAVGSKV 204
           NQKP  +K+L++P ++  A GS+V
Sbjct: 298 NQKPW-EKVLRVPTIKAGARGSRV 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,717,232
Number of Sequences: 37544
Number of extensions: 63187
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)