Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E14
         (206 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)                25   9.5  
SB_25216| Best HMM Match : DUF1589 (HMM E-Value=8.4)                   25   9.5  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_37220| Best HMM Match : Laminin_EGF (HMM E-Value=0.024)             25   9.5  
SB_1144| Best HMM Match : S-antigen (HMM E-Value=1.2)                  25   9.5  

>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 123 QRVRFYDASLPFIN*TM*QILKPNAFNYSVVAKPNSQSAS 4
           Q+   YD  +PF    +  +   NA N SV  KP+++  S
Sbjct: 404 QKAAPYDLDIPFRGQNVSFVYLQNALNTSVYWKPSNEECS 443


>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
          Length = 810

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 91 FYKLNDVTNSKTERIQLFCSGKT 23
          +Y++  + NSK      FCSGKT
Sbjct: 31 YYRILILQNSKRRSNNYFCSGKT 53


>SB_25216| Best HMM Match : DUF1589 (HMM E-Value=8.4)
          Length = 313

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 154 KMLKIPNVRRHAVGSKV 204
           ++LK+P ++RHAVG  V
Sbjct: 2   RLLKVPIIQRHAVGRVV 18


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 90  KVKMRRKSERVVNKKSKASPEKNVE 164
           +V+ RRKS R  NK   A+P+  ++
Sbjct: 700 QVQQRRKSSRSANKAKAATPKATLQ 724


>SB_37220| Best HMM Match : Laminin_EGF (HMM E-Value=0.024)
          Length = 104

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 83  FIKGKDAS*KRTRCQQEIKSLT-GKKC 160
           FIKG  +S  R RC+ +  + T G+KC
Sbjct: 13  FIKGNSSSPGRCRCECDPSTFTQGEKC 39


>SB_1144| Best HMM Match : S-antigen (HMM E-Value=1.2)
          Length = 557

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +3

Query: 102 RRKSERVVNKKSKASPEKN---VENP 170
           +R SER  N KSK S  KN   VENP
Sbjct: 381 KRTSERNRNSKSKNSRRKNRKLVENP 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,816,127
Number of Sequences: 59808
Number of extensions: 83230
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 16,821,457
effective HSP length: 47
effective length of database: 14,010,481
effective search space used: 294220101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)