Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E14
         (206 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC082767-1|AAH82767.1|  276|Homo sapiens ZNF552 protein protein.       28   6.3  
BC062982-1|AAH62982.1|  276|Homo sapiens ZNF552 protein protein.       28   6.3  
BC046237-1|AAH46237.1|  276|Homo sapiens ZNF552 protein protein.       28   6.3  

>BC082767-1|AAH82767.1|  276|Homo sapiens ZNF552 protein protein.
          Length = 276

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 205 ELCFLRRVFVRL-GFSTFFSGEAFDFLLTTRSLLRRIFTFYKLNDVTNSKTERIQLFCSG 29
           E  F +R  + + G S+ FS    DFLL +  LL++  T       +NSKTE + LF  G
Sbjct: 22  EALFAKRCKLHVSGESSVFSESGKDFLLRS-GLLQQEATH---TGKSNSKTECVSLFHGG 77

Query: 28  KT 23
           K+
Sbjct: 78  KS 79


>BC062982-1|AAH62982.1|  276|Homo sapiens ZNF552 protein protein.
          Length = 276

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 205 ELCFLRRVFVRL-GFSTFFSGEAFDFLLTTRSLLRRIFTFYKLNDVTNSKTERIQLFCSG 29
           E  F +R  + + G S+ FS    DFLL +  LL++  T       +NSKTE + LF  G
Sbjct: 22  EALFAKRCKLHVSGESSVFSESGKDFLLRS-GLLQQEATH---TGKSNSKTECVSLFHGG 77

Query: 28  KT 23
           K+
Sbjct: 78  KS 79


>BC046237-1|AAH46237.1|  276|Homo sapiens ZNF552 protein protein.
          Length = 276

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 205 ELCFLRRVFVRL-GFSTFFSGEAFDFLLTTRSLLRRIFTFYKLNDVTNSKTERIQLFCSG 29
           E  F +R  + + G S+ FS    DFLL +  LL++  T       +NSKTE + LF  G
Sbjct: 22  EALFAKRCKLHVSGESSVFSESGKDFLLRS-GLLQQEATH---TGKSNSKTECVSLFHGG 77

Query: 28  KT 23
           K+
Sbjct: 78  KS 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,649,014
Number of Sequences: 237096
Number of extensions: 359893
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 76,859,062
effective HSP length: 47
effective length of database: 65,715,550
effective search space used: 1380026550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)