Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E14
         (206 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   3.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   8.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   8.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   8.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             19   8.2  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.8 bits (39), Expect = 3.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 103 RIFTFYKLNDVTNSKTERIQL 41
           RI+       V N++ ERIQL
Sbjct: 316 RIYEAIHTGSVINTRGERIQL 336


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 133 NQKPHRKKMLKIPNVR 180
           +QKP+ K  +  PN++
Sbjct: 435 HQKPYNKDEIIYPNLK 450


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 133 NQKPHRKKMLKIPNVR 180
           +QKP+ K  +  PN++
Sbjct: 435 HQKPYNKDEIIYPNLK 450


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 121 LSTRNQKPHRKKMLK 165
           +S R  K H+KK  K
Sbjct: 65  ISKRKDKEHKKKKSK 79


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 121 LSTRNQKPHRKKMLK 165
           +S R  K H+KK  K
Sbjct: 65  ISKRKDKEHKKKKSK 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,352
Number of Sequences: 438
Number of extensions: 723
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)