Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E14
         (206 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47910.1 68416.m05224 expressed protein low similarity to non...    26   3.9  
At2g41700.1 68415.m05151 ABC transporter family protein similar ...    25   5.2  
At2g43960.1 68415.m05466 SWAP (Suppressor-of-White-APricot)/surp...    25   6.9  

>At3g47910.1 68416.m05224 expressed protein low similarity to
           nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
           GI:189036; contains Pfam profiles PF04780: Protein of
           unknown function (DUF629), PF04781: Protein of unknown
           function (DUF627)
          Length = 1290

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/25 (36%), Positives = 20/25 (80%)
 Frame = +3

Query: 90  KVKMRRKSERVVNKKSKASPEKNVE 164
           ++++R  + R++ +KS++SP +NVE
Sbjct: 267 EIEVRVAAHRLLQQKSESSPSENVE 291


>At2g41700.1 68415.m05151 ABC transporter family protein similar to
            ATP-binding cassette transporter ABCA1 GI:18031705 from
            [Arabidopsis thaliana]
          Length = 1822

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -3

Query: 195  SYGVSSYVWDFQHF-FP 148
            SY +S+YVWDF  F FP
Sbjct: 1152 SYWLSTYVWDFISFLFP 1168


>At2g43960.1 68415.m05466 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam profile: PF01805
           surp module
          Length = 442

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 48  MRSVLE-FVTSFSL*KVKMRRKSERVVNK 131
           M +VLE F T+FS  K K   + + VVNK
Sbjct: 362 MEAVLEGFFTAFSAFKKKQEDEEDEVVNK 390


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,028,098
Number of Sequences: 28952
Number of extensions: 56761
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,070,560
effective HSP length: 48
effective length of database: 10,680,864
effective search space used: 213617280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)