Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E13
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...   125   3e-30
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...   121   4e-29
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   1.7  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    27   1.7  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   2.3  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   3.0  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   3.0  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   4.0  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.0  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   5.2  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    24   9.1  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    24   9.1  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    24   9.1  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score =  125 bits (302), Expect = 3e-30
 Identities = 60/102 (58%), Positives = 74/102 (72%)
 Frame = +3

Query: 27  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 206
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 207 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 332
           E +RL + KKTV+R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 61  EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score =  121 bits (292), Expect = 4e-29
 Identities = 58/102 (56%), Positives = 73/102 (71%)
 Frame = +3

Query: 27  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 206
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 207 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 332
           E +RL + +K V+R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 61  EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 48  RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 155
           RR  + N KS+++R    PG  L  +   KPK   R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 5   EAVKKLQNGAAAYIQTTFVLQHKVKPKENSTN 100
           E + KLQN    Y+    + Q KV PK   TN
Sbjct: 500 EKILKLQNMPGTYVDKWTLDQEKVMPKNLKTN 531


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 48  RRRLSYNTKSN-QRRIVRTPGGRLVY 122
           R+  SY T +   +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 272 QMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQV 385
           Q+RE A R+     +TE ++  + A  +++ W K ++V
Sbjct: 488 QVREQARRRRLEVEKTEPKKLARPAKIKNEAWSKQKEV 525


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 388 IYLAAFLPDFMLACCAFRTFTIFCSS 311
           I+L A + +  L+CC   T  I+CSS
Sbjct: 13  IHLKAIIEEPKLSCCHCETCRIWCSS 38


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 433 SCFFLVFIIFYLKPYIYLAAFLPDFMLACCAFRTFTIF 320
           SC FLV   F   P+  L+     F++  C    FT+F
Sbjct: 141 SCVFLVGFGFGSLPFAPLSGIYGRFVVYFCTLLMFTLF 178


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 212 FSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATG 352
           FSS L    + +R ++  L++     HRQ F+  RTE+  + ++A+G
Sbjct: 22  FSSTLSNPLTYSRSYKRVLARWGIRVHRQRFVSPRTEE-AAARTASG 67


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 142 LGFLTYWYTKRPPGVRTILL 83
           +GFL Y+Y K P G R  +L
Sbjct: 133 VGFLPYFYVKAPVGFRPEML 152


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 406 FYLKPYIYLAAFLPDFMLACCAFRT 332
           F  KP++ L AF+P ++  C  FRT
Sbjct: 209 FVPKPFMSLMAFIPAYLEVC--FRT 231


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 153 RCGQCKSKLRGIQPARPAERSR 218
           RC +CK   +G    RP  R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 308 QESSDDALLHAFVTENTSINALHCLLAVAETRTLCGPR 195
           Q++S+D++ H F + N  IN    L A+        PR
Sbjct: 79  QDASEDSINHMFESINPPINLAAFLTAMGSMLCRISPR 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,935
Number of Sequences: 5004
Number of extensions: 27755
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)