Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E13
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          56   1e-08
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)                29   1.3  
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               29   2.3  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   2.3  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_19460| Best HMM Match : AAA (HMM E-Value=0)                         28   3.0  
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06)                 27   9.2  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +3

Query: 198 RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 329
           RP +   +   +KTV R YGG  C  CVK+RI+RAFLIEEQKIV
Sbjct: 2   RPMKLMHISKPQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIV 45


>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
          Length = 493

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 272 QMREAAHRQSFLDRRTEDRESPKSATGQHK 361
           QMRE     S L++R ED    KS  G H+
Sbjct: 142 QMREMREEMSALEKREEDMRKRKSEVGNHQ 171


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 3   TRLSKSYKMVQRLTFRRRLSYNTKSNQRR 89
           TRL+KS K ++    R+R  YNT +++RR
Sbjct: 557 TRLAKSAKELEEELERKREDYNTAADERR 585


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 51  RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 140
           RR++  T SN  R++RTP G+ ++  VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 212  FSSLLPQEDSEARLWRC--SLSQMREAAHRQSFLDRRTEDRESPK 340
            F  +L   D     WR   ++  +R+   RQ  L R  +DR SPK
Sbjct: 971  FPPMLDSADMHFETWRQRRAVEHLRQQHERQDILGRPHQDRSSPK 1015


>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 84  FGLTLCCKTNVV*M*AAAPFCSFLTASC 1
           +G   CCKT +V   A++  C+F++ SC
Sbjct: 524 YGPPGCCKTTLVRAAASSTHCTFMSLSC 551


>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
          Length = 340

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 84  FGLTLCCKTNVV*M*AAAPFCSFLTASC 1
           +G   CCKT +V   A++  C+F++ SC
Sbjct: 53  YGPPGCCKTTLVRAAASSTHCTFMSLSC 80


>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 177 LRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 335
           ++G++  R  + S  C R   V +VY   +C +C +   V+   + E ++ KV
Sbjct: 201 VKGVRDVRVNKVSERCLRGACVYKVYERCVCTRCTRGACVQG--LREVRVYKV 251


>SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -2

Query: 436 FSCFFLVFIIFYLKPYIYLAAFLPDF-----MLACCAFRTF 329
           F+ +FL ++ F   P+IY+  FL DF      L CC  +++
Sbjct: 291 FAIYFLFYVNFTASPFIYV-FFLEDFNSSAKKLLCCGTKSW 330


>SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06)
          Length = 462

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 430 CFFLVFIIFYLKPYIYLAAFLPDFMLACCAFRTFTIFCSSIKKALT 293
           CF+        K + + A F P  +L  C F+       +I+K LT
Sbjct: 83  CFYHSMESVIRKLFCFFAYFCPKILLISCIFKCCAAIDVNIRKVLT 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,265,369
Number of Sequences: 59808
Number of extensions: 224260
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)