Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E13
         (443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.49 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   2.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   2.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   2.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   2.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   8.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 90  IVRTPGGRLVYQYVKKPKKI 149
           + +  G RLVYQ+V  PK I
Sbjct: 527 LAKVDGQRLVYQFVDVPKDI 546


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -2

Query: 439 SFSCFFLVFIIFYLKPYIYLAAFLPDFMLACCAFRTF 329
           ++SC  +  I    + + +   F+P  +L   +F TF
Sbjct: 286 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITF 322


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -2

Query: 439 SFSCFFLVFIIFYLKPYIYLAAFLPDFMLACCAFRTF 329
           ++SC  +  I    + + +   F+P  +L   +F TF
Sbjct: 255 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITF 291


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -2

Query: 439 SFSCFFLVFIIFYLKPYIYLAAFLPDFMLACCAFRTF 329
           ++SC  +  I    + + +   F+P  +L   +F TF
Sbjct: 306 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITF 342


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -2

Query: 439 SFSCFFLVFIIFYLKPYIYLAAFLPDFMLACCAFRTF 329
           ++SC  +  I    + + +   F+P  +L   +F TF
Sbjct: 255 NYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITF 291


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 87  SFGLTLCCKTNVV 49
           +F  T+CCKT ++
Sbjct: 338 AFKQTICCKTRII 350


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 243  SLSSCGSRDENALRAS 196
            S+S  GSRDE++ R S
Sbjct: 1402 SISRAGSRDEDSTRDS 1417


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -2

Query: 439 SFSCFFLVFIIFYLKPYIYLAAFLPDFMLACCAFRTFTI 323
           +F+C  +VF++     Y     ++P  ++   ++ +F I
Sbjct: 230 NFTCLEVVFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWI 268


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 279 VKQRIVRAFLIEEQKIVKV 335
           + + I+R FLI +QK  K+
Sbjct: 73  ITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 279 VKQRIVRAFLIEEQKIVKV 335
           + + I+R FLI +QK  K+
Sbjct: 56  ITRYIIRMFLISQQKTSKL 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,141
Number of Sequences: 438
Number of extensions: 1870
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)