Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E12
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 103 6e-23
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 65 2e-11
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 65 3e-11
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 63 1e-10
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 38 0.003
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 38 0.003
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 37 0.008
04_01_0106 + 1102880-1105691,1105781-1105806 28 4.6
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891 27 6.1
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 103 bits (248), Expect = 6e-23
Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 7/146 (4%)
Frame = +3
Query: 9 VSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYH 188
++REW+ LLS + + LF NN + Q NP S +HL YFKF+GR +A AL+
Sbjct: 3320 LTREWYQLLSRVIFDKGALLFTTVG-NNATFQPNPNSVYQTEHLSYFKFVGRVVAKALFD 3378
Query: 189 GRFIYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSLVWIKDNNIDECGLEMWFSVDFE- 365
G+ + FT FYK +L K+T DIE++DP++Y +L W+ +N++ + ++ FS+D +
Sbjct: 3379 GQLLDVHFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIP-DLTFSMDPDE 3437
Query: 366 ---VL---GQVIHHELKPAGDKERVT 425
+L +V +ELKP G RVT
Sbjct: 3438 EKHILYEKNEVTDYELKPGGRNIRVT 3463
>03_05_0712 - 27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 65.3 bits (152), Expect = 2e-11
Identities = 40/139 (28%), Positives = 75/139 (53%)
Frame = +3
Query: 9 VSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYH 188
+S+E+ LS +P Y LF A+ ++ SL + ++ + + + +F+GR + ALY
Sbjct: 855 LSKEFLTDLSKAAFSPEYGLFSQASASDSSLIPSNSAKLLDNGIDMIEFLGRVVGKALYE 914
Query: 189 GRFIYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSLVWIKDNNIDECGLEMWFSVDFEV 368
G + F+ F +++L + + ++ ++D E Y SL+ +K D L + F++ E+
Sbjct: 915 GILLDYCFSPVFVQKLLGRYSFLDELSTLDSELYRSLMQLKHYEGDVEDLCLDFTLTEEL 974
Query: 369 LGQVIHHELKPAGDKERVT 425
G+ I HEL+P G VT
Sbjct: 975 GGRRIVHELRPGGKNISVT 993
>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 64.9 bits (151), Expect = 3e-11
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Frame = +3
Query: 90 NYSLQINPAS-YVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTMKDI 266
++ L NP S V+ HL YF F+G + A+Y G + F F ++ +K + D+
Sbjct: 741 DHLLYPNPGSGLVHEQHLQYFHFLGSLLGKAIYEGILVDLPFATFFLSKLKHKYNFLNDL 800
Query: 267 ESIDPEFYNSLVWIKDNNIDECGLEMWFSVDFEVLGQVIHHELKPAGDKERVT 425
S+DPE Y L+ +K + D LE++F + G+ EL P G RVT
Sbjct: 801 PSLDPELYRHLLSLKHYDGDISQLELYFVIVNNEYGEQSEEELLPGGRDMRVT 853
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 62.9 bits (146), Expect = 1e-10
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Frame = +3
Query: 9 VSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYH 188
V REWF ++ + +P LF + +N S V+P HL YF F GR I +AL H
Sbjct: 565 VLREWFCMVCQALFSPQQVLFSPCPSDRQRFFLNGTSAVDPLHLKYFIFSGRIIGLALMH 624
Query: 189 GRFIYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSLVWIKDNNIDEC-GLEMWFSVDFE 365
+ + + + + ++DI + DP Y S I + + GLE+ FS D
Sbjct: 625 RVQVGITLDRTLFLHLAGRSIKLEDISAADPVMYASCKRILEMDAAVVDGLELTFSRDVH 684
Query: 366 VLG 374
LG
Sbjct: 685 ELG 687
>05_05_0136 - 22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 147 FKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSLVWIK 311
F +G+ +A A+ R + F+ FY+ +L ++L + DI S DPE +L+ K
Sbjct: 1197 FHLLGQVVAKAVKDNRILDIPFSKAFYRLILGQELNIYDIHSFDPELAMTLMEFK 1251
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 147 FKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTMKDIESIDPE 284
FK +G +A A+ GR + + FYK ML + L + DI S DP+
Sbjct: 1038 FKLLGHLVARAVLDGRVLDIPLSKAFYKIMLEQDLDIYDIPSFDPK 1083
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 144 YFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSL 299
+F+ +GR +A L GR + + YK +L ++L + DI S D EF +L
Sbjct: 1482 HFRLVGRVMAKVLQDGRLLDLPLSTALYKLILGQELDLFDIISFDAEFGKTL 1533
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 216 MPFYKRMLNKKLTMKDIESID-PEFYNSLVWIKDNNIDECGLEM 344
+P + L+ K ++S + +FYN L W N +D GL M
Sbjct: 373 LPLAITAVGNLLSFKRLDSFEWDKFYNQLNWELHNRLDNQGLNM 416
>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
Length = 1274
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 138 LLYFKFIGRFIAMALYHGRFIYSGF 212
L +F FI A+A +FIYSGF
Sbjct: 606 LFFFLFISNLSALATGEDQFIYSGF 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,667,202
Number of Sequences: 37544
Number of extensions: 244150
Number of successful extensions: 563
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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