Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E12
(490 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20164| Best HMM Match : No HMM Matches (HMM E-Value=.) 252 1e-67
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 4e-26
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 4e-24
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 6e-18
SB_12797| Best HMM Match : HECT (HMM E-Value=0) 60 1e-09
SB_5238| Best HMM Match : HECT (HMM E-Value=0) 55 4e-08
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_51591| Best HMM Match : HECT (HMM E-Value=0) 41 5e-04
SB_25557| Best HMM Match : HECT (HMM E-Value=0) 37 0.008
SB_11430| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.010
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 31 0.39
SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86) 28 3.6
SB_18395| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=0.74) 27 6.3
SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_19526| Best HMM Match : Pentaxin (HMM E-Value=1.7e-10) 27 6.3
>SB_20164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 252 bits (617), Expect = 1e-67
Identities = 110/133 (82%), Positives = 124/133 (93%)
Frame = +3
Query: 9 VSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYH 188
V+REWFFLLSHEVLNPMYCLFEYANKNNYSLQIN AS VNPDHL+YFKFIGRFIAMALYH
Sbjct: 52 VAREWFFLLSHEVLNPMYCLFEYANKNNYSLQINAASSVNPDHLMYFKFIGRFIAMALYH 111
Query: 189 GRFIYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSLVWIKDNNIDECGLEMWFSVDFEV 368
G+FI GFT+PFYKRMLNKKL MKD+E+IDPEFYNSLVW+K+NNI+ECGLEM+F+VD E+
Sbjct: 112 GKFIDRGFTLPFYKRMLNKKLLMKDLETIDPEFYNSLVWVKENNIEECGLEMFFTVDMEL 171
Query: 369 LGQVIHHELKPAG 407
LG+V H+LKP G
Sbjct: 172 LGKVTSHDLKPGG 184
Score = 35.9 bits (79), Expect = 0.018
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 427 ESNKEQYLQVVTQWRMTRGIE 489
E NKE+Y+ ++T+WR+ RGIE
Sbjct: 191 EENKEEYISLMTEWRLNRGIE 211
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 114 bits (274), Expect = 4e-26
Identities = 53/139 (38%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Frame = +3
Query: 12 SREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPAS-YVNPDHLLYFKFIGRFIAMALYH 188
+RE+FFL+S ++ NP Y LFEY+ + Y++Q++P S YV+ H +F+F GR + + + H
Sbjct: 1954 AREFFFLISRQIFNPYYGLFEYSANDTYTVQVSPVSLYVDNSH-EWFRFCGRIVGLVIIH 2012
Query: 189 GRFIYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSLVWIKDNNIDECGLEMWFSVDFEV 368
+ + FT FYK +L + D+E++D F+ S+ W+ +N+I++ L++ FSV E+
Sbjct: 2013 QHLLDAFFTRTFYKALLRSLCDLSDVEALDALFHQSMTWVIENDIEDV-LDLTFSVSEEI 2071
Query: 369 LGQVIHHELKPAGDKERVT 425
GQV EL P G VT
Sbjct: 2072 FGQVTERELIPGGKDIAVT 2090
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 107 bits (258), Expect = 4e-24
Identities = 51/137 (37%), Positives = 78/137 (56%)
Frame = +3
Query: 15 REWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGR 194
REWF ++S E+ NP Y LF + + + Q N +S+ N +HL YFKF+GR +A A+Y +
Sbjct: 2076 REWFIIMSREMFNPNYALFTTSPGDRVTYQPNASSHCNSNHLSYFKFVGRVVAKAVYDNK 2135
Query: 195 FIYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSLVWIKDNNIDECGLEMWFSVDFEVLG 374
+ FT FYK +L K + D+ES D FY L ++ +++I E G+++ FS + G
Sbjct: 2136 LLECYFTRSFYKHILGKPVHFTDLESFDYSFYQGLQYLLEHDISELGMDLTFSTEVREFG 2195
Query: 375 QVIHHELKPAGDKERVT 425
+L P G VT
Sbjct: 2196 LSEIRDLIPNGRNIPVT 2212
>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 87.4 bits (207), Expect = 6e-18
Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = +3
Query: 9 VSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPAS-YVNPDHLLYFKFIGRFIAMALY 185
+ REWF+LLS EV NP Y LFEY+ +NY+LQINP S N +HL YFKFIGR MA+Y
Sbjct: 328 LQREWFYLLSKEVFNPYYGLFEYSASDNYTLQINPNSGLCNEEHLSYFKFIGRVAGMAVY 387
Query: 186 HGRFI 200
HG+ +
Sbjct: 388 HGKLL 392
>SB_12797| Best HMM Match : HECT (HMM E-Value=0)
Length = 749
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Frame = +3
Query: 9 VSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYH 188
VS+E+F L+ ++ NP Y +F Y ++ NP S+ + F IG + +A+Y+
Sbjct: 496 VSKEFFQLIVEQIFNPDYGMFTY-DEATRICWFNPTSFESD---AQFCLIGLVLGLAIYN 551
Query: 189 GRFIYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSLVWI--KDNNIDECGLEMWFSVDF 362
+ F M Y+++ K T++D++ P Y SL + + N++E L F + +
Sbjct: 552 NIILDIHFPMVVYRKLFGKPGTVEDLKDSHPVLYMSLTELLTYEGNVEE-DLMCTFKIGY 610
Query: 363 -EVLGQVIHHELKPAGDKERVT 425
+V G + HELK G+ VT
Sbjct: 611 TDVFGSDLTHELKANGESIPVT 632
>SB_5238| Best HMM Match : HECT (HMM E-Value=0)
Length = 212
Score = 54.8 bits (126), Expect = 4e-08
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +3
Query: 312 DNNIDECGLEMWFSVDFEVLGQVIHHELKPAGDKERVT 425
+NNI+ECGLEM+F+VD E+LG+V H+LKP G VT
Sbjct: 2 ENNIEECGLEMFFTVDMELLGKVTSHDLKPGGTDIAVT 39
Score = 35.9 bits (79), Expect = 0.018
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 427 ESNKEQYLQVVTQWRMTRGIE 489
E NKE+Y+ ++T+WR+ RGIE
Sbjct: 40 EENKEEYISLMTEWRLNRGIE 60
>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1263
Score = 54.0 bits (124), Expect = 6e-08
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Frame = +3
Query: 18 EWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRF 197
E+F LL E+L+P Y +F Y +++ ++ N ++ + F IG +A+Y+
Sbjct: 1 EFFLLLLTEILDPKYGMFTYL-EDSQTIWFNDLTF---EESPMFLLIGVICGLAIYNSTI 56
Query: 198 IYSGFTMPFYKRMLNKKLTMKDIESIDPEFYNSLVWIKDNNIDECGLEMWFSVDFEVL-- 371
F YK++L KK + D P +L ++ D + D+ LE F ++F+++
Sbjct: 57 FDLRFPPVLYKKLLRKKPNLDDFRGFQPSVARNLQYLLDYSDDD--LEDTFGLNFQIMRE 114
Query: 372 --GQVIHHELKPAGDKERVT 425
G + + +L P G + VT
Sbjct: 115 KYGALEYIDLVPGGGEVPVT 134
>SB_51591| Best HMM Match : HECT (HMM E-Value=0)
Length = 694
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 138 LLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTMKD-IESIDPEFY-NSLVWIK 311
L + IGR I A+ + + PF K++L L+ D + S D E + N + W++
Sbjct: 424 LRQLRLIGRLIGAAICDDLLLSLHLSKPFVKQILGIPLSHPDDLSSFDHELHSNQITWVQ 483
Query: 312 DNNIDECGLEMWFSVD 359
+N++D+ G FS+D
Sbjct: 484 ENSVDDLGFT--FSID 497
>SB_25557| Best HMM Match : HECT (HMM E-Value=0)
Length = 454
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 147 FKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTM--KDIESIDPEFYNSL 299
F+F+GRF+ AL R + F+ FYK ML + T +D+ IDP S+
Sbjct: 119 FRFLGRFLGRALLDFRMVDIPFSCAFYKWMLGFEATFDYRDLFDIDPVLAKSI 171
>SB_11430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 36.7 bits (81), Expect = 0.010
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +3
Query: 51 NPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALY 185
+P + LF+ L +P S+++ +HLL ++F+G+ + A+Y
Sbjct: 93 DPAFNLFKVTTGEEQRLYPSPTSFIHDNHLLLYEFVGKMLGKAVY 137
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/78 (26%), Positives = 31/78 (39%)
Frame = +3
Query: 66 LFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNK 245
LF K Y P Y + D L ++ +GR I + L F K +L +
Sbjct: 1738 LFYQPGKAGY-YSPRPGQYTD-DRLNCYRNVGRIIGLCLLQNELCTLTFNRHVIKFILGR 1795
Query: 246 KLTMKDIESIDPEFYNSL 299
++ D+ DP Y SL
Sbjct: 1796 RVGWHDLAFFDPVLYESL 1813
>SB_47662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 348 FSVDFEVLGQVIHHELKPAGDKERVT 425
F V F G+V+ H LKP GD VT
Sbjct: 24 FQVSFTSYGEVVTHNLKPKGDTIPVT 49
>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
Length = 1578
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 219 PFYKRMLNKKLTMKDIESIDPEFYNSLVWIKDNNIDE 329
P Y RM+ + +E +DPEF SLV +DE
Sbjct: 313 PLYLRMMEGRYLF--LEILDPEFLESLVQFSVGTVDE 347
>SB_18395| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=0.74)
Length = 730
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +3
Query: 228 KRMLNKKLTMKDIESIDPEFYNSLVWIKDNNIDE 329
+R+L + ++ + + SI +FY++L+W D ++E
Sbjct: 407 RRLLPRPISKERVLSIITQFYSTLIWQDDYAMEE 440
>SB_40519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 449 RYCSLFDSGHSLLVPGRFQFVVYH 378
R+C+L G S+L+ GR VV+H
Sbjct: 588 RHCALKKPGTSVLIKGRIVVVVFH 611
>SB_19526| Best HMM Match : Pentaxin (HMM E-Value=1.7e-10)
Length = 274
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 45 VLNPMYCLFEYANKNNYSLQINPASYVNPDHLLYFKFIGRFIAMAL 182
+L M+C+ + A+ NN+ +Q + V+ L+ + F+A++L
Sbjct: 18 ILPMMFCICDIADSNNFLIQSYAYNKVSLTSSLFTLYSNAFVAVSL 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,283,504
Number of Sequences: 59808
Number of extensions: 302112
Number of successful extensions: 752
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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