Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E11
(501 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13; Endopt... 173 2e-42
UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gamb... 146 2e-34
UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8... 138 6e-32
UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44; Coelom... 125 5e-28
UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella ve... 118 7e-26
UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 ... 108 6e-23
UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3; Ixodoid... 98 1e-19
UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma... 89 7e-17
UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1; ... 88 9e-17
UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=1... 87 2e-16
UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17; Magn... 83 5e-15
UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=... 82 6e-15
UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8; Pezizom... 81 1e-14
UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7; Pezizomy... 81 1e-14
UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthor... 68 1e-10
UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1; F... 63 3e-09
UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2; Caenorh... 62 9e-09
UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1; ... 39 4e-07
UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 56 4e-07
UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2; Cryptos... 48 9e-05
UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150, w... 47 3e-04
UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2; Dictyos... 45 8e-04
UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9; Trypano... 44 0.002
UniRef50_A4S554 Cluster: Ribosomal protein L28, component of cyt... 39 0.055
UniRef50_UPI00006CFBC8 Cluster: hypothetical protein TTHERM_0048... 36 0.68
UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing pr... 36 0.68
UniRef50_Q8IM40 Cluster: Putative uncharacterized protein; n=4; ... 34 1.6
UniRef50_Q55DQ9 Cluster: Putative uncharacterized protein; n=2; ... 33 3.6
UniRef50_Q54WB3 Cluster: Putative uncharacterized protein; n=1; ... 33 3.6
UniRef50_O97239 Cluster: Putative uncharacterized protein MAL3P2... 33 3.6
UniRef50_Q6X493 Cluster: Sensor histidine kinase; n=10; Streptoc... 33 4.8
UniRef50_A7HRP5 Cluster: Glutamine synthetase catalytic region; ... 33 4.8
UniRef50_Q25893 Cluster: Liver stage antigen; n=41; Plasmodium f... 33 4.8
UniRef50_P49958 Cluster: Uncharacterized protein C14B1.5; n=40; ... 33 4.8
UniRef50_Q8GCM9 Cluster: ORF228; n=2; Mycoplasma|Rep: ORF228 - M... 32 6.3
UniRef50_A2U4J5 Cluster: Type III restriction enzyme, res subuni... 32 6.3
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:... 32 6.3
UniRef50_A6YGE1 Cluster: DNA-directed RNA polymerase; n=1; Lepto... 32 8.3
UniRef50_Q23QT9 Cluster: Myb-like DNA-binding domain, SHAQKYF cl... 32 8.3
UniRef50_Q4PHF4 Cluster: Putative uncharacterized protein; n=1; ... 32 8.3
>UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13;
Endopterygota|Rep: 60S ribosomal protein L28 -
Drosophila melanogaster (Fruit fly)
Length = 144
Score = 173 bits (420), Expect = 2e-42
Identities = 79/124 (63%), Positives = 98/124 (79%)
Frame = +1
Query: 67 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
SSHLNW+IIRNNNAFL+KK ++KKPFS EPNN+ +++SYRY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 247 FTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILR 426
FT V KK K +P KN +R FKAG RRSL K K LL + YR DLT+A LRRASA+LR
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLR 123
Query: 427 SQRP 438
SQ+P
Sbjct: 124 SQKP 127
>UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000014265 - Anopheles gambiae
str. PEST
Length = 158
Score = 146 bits (354), Expect = 2e-34
Identities = 67/124 (54%), Positives = 90/124 (72%)
Frame = +1
Query: 67 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
SSHLNW+I+R++NAFL+K+ +I+KPFS EP N+TNL+S+RY+GL+H K + + ++KG
Sbjct: 4 SSHLNWLIVRDHNAFLLKRRDIRKPFSTEPGNLTNLSSFRYSGLVHHKTI-TITPAEKKG 62
Query: 247 FTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILR 426
VY + K NKP K ++ K G RR+L K ++KAN YR DL A LRRASAILR
Sbjct: 63 VNFVYNRKKVLNKPAKAPVKVTLKEGPRRTLKKIANMMKANRYRADLRGAALRRASAILR 122
Query: 427 SQRP 438
SQRP
Sbjct: 123 SQRP 126
>UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8;
Neoptera|Rep: Ribosomal protein L28-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 139
Score = 138 bits (334), Expect = 6e-32
Identities = 68/124 (54%), Positives = 84/124 (67%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 243
MS+ L WMI RNNNA+L+KK +IKKPFS EP N+ N+ S+RYNGL+ K V V D K
Sbjct: 1 MSADLYWMITRNNNAYLLKKRDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGK 60
Query: 244 GFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAIL 423
GF + K+AK NKP K+ I AG RRSL+K +R L YR DLT+ LR+ASAIL
Sbjct: 61 GFVVTTKRAKQQNKPGKSNISVTMSAGPRRSLYKLRRYLDGGKYRKDLTQVALRKASAIL 120
Query: 424 RSQR 435
SQ+
Sbjct: 121 ESQK 124
>UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44;
Coelomata|Rep: 60S ribosomal protein L28 - Homo sapiens
(Human)
Length = 137
Score = 125 bits (302), Expect = 5e-28
Identities = 58/126 (46%), Positives = 82/126 (65%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 243
MS+HL WM++RN ++FL+K+ K+ +S EPNN+ NS+RYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 244 GFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAIL 423
G +V K+ KP + +R AR +L + +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 424 RSQRPI 441
RSQ+P+
Sbjct: 119 RSQKPV 124
>UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 118 bits (284), Expect = 7e-26
Identities = 61/125 (48%), Positives = 79/125 (63%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 243
MSS L W IIRNN+ FLV+ K +KEPNNVT LN+++YNGL++KK VGV P K
Sbjct: 1 MSSDLQWSIIRNNSCFLVRSQG--KTLTKEPNNVTGLNAFKYNGLVNKKVVGVDAAPSGK 58
Query: 244 GFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAIL 423
G I +K KA NKP K + + +RR+L + + N+YR DL +RRA AIL
Sbjct: 59 GVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRACAIL 118
Query: 424 RSQRP 438
RSQ+P
Sbjct: 119 RSQKP 123
>UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 -
Suberites domuncula (Sponge)
Length = 136
Score = 108 bits (260), Expect = 6e-23
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKP---FSKEPNNVTNLNSYRYNGLIHKKAVGVVENP 234
MS+ L W +I+N+++FL+++ + F+ EPNNV N NS+++NGL++KK VGV
Sbjct: 1 MSAELQWELIKNSSSFLLRRKGPRGSGVTFTTEPNNVMNKNSFKFNGLVNKKVVGVSSAA 60
Query: 235 DRKGFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRAS 414
D KG K++K +KP K +R RR+ K+ L+ YR DL + +RRAS
Sbjct: 61 DNKGVLFKTKRSKVVSKPAKMFVRATLSKDRRRAFKSIKKNLECTEYRPDLAELAVRRAS 120
Query: 415 AILRSQRP 438
AIL SQRP
Sbjct: 121 AILSSQRP 128
>UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3;
Ixodoidea|Rep: 60S ribosomal protein L28 - Argas
monolakensis
Length = 142
Score = 97.9 bits (233), Expect = 1e-19
Identities = 53/127 (41%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 243
+S WM++RN ++FLVKK NIKK FS +P N + + R+ G I K+A+ V + K
Sbjct: 2 VSRTYRWMVVRNCSSFLVKKRNIKKWFSTDPLNPKGVYANRFAGTIKKRALTVEPHSSGK 61
Query: 244 GFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKA-NHYRTDLTKATLRRASAI 420
G T VY K KP K + R G RR++ + +K +YR DL + RRASAI
Sbjct: 62 GVTFVYLAHKGATKPAKRLKRVQLVKGPRRTMVSIRNWIKGMGYYRRDLRRVCQRRASAI 121
Query: 421 LRSQRPI 441
L+SQR I
Sbjct: 122 LKSQRAI 128
>UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma
japonicum|Rep: Ribosomal protein L28 - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 88.6 bits (210), Expect = 7e-17
Identities = 45/113 (39%), Positives = 64/113 (56%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 243
MSSHL W +I+NN+ FL+K+ + FS++P N+ N N +RY G +HKKA+G+ E K
Sbjct: 1 MSSHLIWDLIKNNHCFLMKRG--PECFSRDPLNLKNKNCFRYCGPVHKKAIGIKEERYGK 58
Query: 244 GFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATL 402
G + K +KP K + R F G RR+L K + L YR +L L
Sbjct: 59 GVVVTTKNVAKDHKPAKAVTRTKFVRGRRRTLQKIRNLTCKQKYRRELKMLAL 111
>UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 221
Score = 88.2 bits (209), Expect = 9e-17
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Frame = +1
Query: 67 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
S L W+++RNN++F+VK+ I + FS+EP N+ L+SY+Y+GL++ KAVG+ KG
Sbjct: 3 SQDLQWLLVRNNSSFIVKQKGIGRIFSREPRNLVQLHSYKYSGLVNAKAVGIEAAKSGKG 62
Query: 247 FTIVYKKAKATNKPVKNIIRRPF--KAGARRSLFKAKRLLKANHYRTDLTKATLR 405
I K AK ++ +K + K G RR+ ++ YR DLT+ R
Sbjct: 63 VVITTKNAKQSSSAIKKTVNVATLKKGGGRRTAGAVSNVVAKKGYRADLTREPTR 117
>UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=19;
Neodiplogasteridae|Rep: Large subunit ribosomal protein
28 - Pristionchus sp. 11 RS5228
Length = 127
Score = 87.4 bits (207), Expect = 2e-16
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Frame = +1
Query: 88 IIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKK 267
+IRNN+AFL ++ I+K FS+EP N+ +NS YNGL + KAVGV D K + KK
Sbjct: 2 VIRNNSAFLRRQRGIQKAFSREPLNLKGINSPNYNGLTNNKAVGVTLAEDNKSVVVSVKK 61
Query: 268 AKATNKPVKNIIRRPFKAGARRSLFKA-KRLLKANHYRTDLTKATLRRASAILRSQR 435
N P +++I+ K G R + K+ + L+K + R K RRAS +LRS R
Sbjct: 62 TGKKNLPAQSVIKTTIKRGGARGIVKSVQGLVKGRNAR--FAKLAARRASQLLRSVR 116
>UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17;
Magnoliophyta|Rep: 60S ribosomal protein L28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 82.6 bits (195), Expect = 5e-15
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Frame = +1
Query: 76 LNWMIIRNNNAFLVK---KANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
L W I++NNN FLVK + N K FSKE NN+TN++SY+++GL +KK V + +
Sbjct: 8 LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67
Query: 247 FTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILR 426
+ K K NKP ++ + K R + N+YR DL KA L R SAI +
Sbjct: 68 VVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISK 127
Query: 427 SQR 435
R
Sbjct: 128 GLR 130
>UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=1;
Schizosaccharomyces pombe|Rep: Probable 60S ribosomal
protein L28e - Schizosaccharomyces pombe (Fission yeast)
Length = 134
Score = 82.2 bits (194), Expect = 6e-15
Identities = 51/128 (39%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKK-PFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDR 240
+S+ L W +IR+NN FLVK+ F++EP NV+ N+ R++GL + KAVGV N R
Sbjct: 3 VSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPR 62
Query: 241 KGFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFK--AKRLLKANHYRTDLTKATLRRAS 414
I K KP K + + R +K A R+ + YR DL K ++ RAS
Sbjct: 63 GVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTG-YRDDLVKVSVARAS 121
Query: 415 AILRSQRP 438
AIL SQRP
Sbjct: 122 AILSSQRP 129
>UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8;
Pezizomycotina|Rep: 60S ribosomal protein L28 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 157
Score = 81.4 bits (192), Expect = 1e-14
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKK-ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDR 240
+SS L W I RN NAFLVK+ FS++P N+ N S++Y G + KAVG V+ +
Sbjct: 8 VSSDLVWQITRNQNAFLVKRRTGGGSQFSRDPLNLQNKQSFKYAGYANTKAVG-VQATEN 66
Query: 241 KGFTIVYKKAKATNKPVKNIIRRPF-KAGARRSLFKAKRLLKA-NHYRTDLTKATLRRAS 414
G ++ KK +P KN++ + A R ++KA A N YR DL + + R S
Sbjct: 67 GGVVVITKKPGNPQQPAKNLVSVSWGPNAATRKIYKAVASKTAKNGYRADLREDAVARVS 126
Query: 415 AILRSQRP 438
AI RSQ+P
Sbjct: 127 AIRRSQKP 134
>UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7;
Pezizomycotina|Rep: RIB40 genomic DNA, SC111 -
Aspergillus oryzae
Length = 157
Score = 81.0 bits (191), Expect = 1e-14
Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKK-ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDR 240
+SS L W + RN NAFLVK+ + FS++P N+ N +S++Y G + KA+G V+ +
Sbjct: 8 VSSDLVWQLTRNQNAFLVKRNSGGGSQFSRDPLNLQNKHSFKYAGYANTKAIG-VQPTEN 66
Query: 241 KGFTIVYKKAKATNKPVKNIIRRPF--KAGARRSLFKAKRLLKANHYRTDLTKATLRRAS 414
G ++ KK+ +P KN +R F KA R+ N YR DL + + R S
Sbjct: 67 GGVVVLTKKSGNAQQPGKNAVRVTFGPKASTRKIYKGVADKTAKNGYRADLREDAVARVS 126
Query: 415 AILRSQRP 438
AI RSQ+P
Sbjct: 127 AIRRSQKP 134
>UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthora
infestans|Rep: Ribosomal protein L28 - Phytophthora
infestans (Potato late blight fungus)
Length = 139
Score = 68.1 bits (159), Expect = 1e-10
Identities = 42/118 (35%), Positives = 63/118 (53%)
Frame = +1
Query: 67 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
S L W++ +N ++FLVK+ F++E N+ N N +Y+GL KAV + + D+K
Sbjct: 3 SDTLTWLLTKNTSSFLVKRNG--NEFAREKFNLLNRNCRKYSGLASTKAVDISIS-DKK- 58
Query: 247 FTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAI 420
T+ K KAT KP K P + GAR + + N+YR DL KA L + S +
Sbjct: 59 VTLTTKIEKATKKPAKAQNAVPLRKGARGGANTIRANISRNYYRRDLKKAALAKWSRL 116
>UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1;
Filobasidiella neoformans|Rep: 60s ribosomal protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 156
Score = 63.3 bits (147), Expect = 3e-09
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 243
MSS L W+++RN N+F VK + FS+E N+ N ++++Y+GL + K V + +P
Sbjct: 1 MSSDLTWLLVRNWNSFQVKGGH-GPVFSREKGNLLNKSAHKYSGLANSKVVSI--HPSAA 57
Query: 244 GFTIVYKKAKATNKP-----VKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRR 408
G I K KA KP ++ + G RR+ A YR DL + R
Sbjct: 58 G-GITITKIKADAKPNQVASARSHVTLKRSTGPRRANKIAAAETAGKGYRADLRAVAVAR 116
Query: 409 ASAILRSQR 435
SA+LR++R
Sbjct: 117 TSALLRAER 125
>UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L28 -
Caenorhabditis elegans
Length = 126
Score = 61.7 bits (143), Expect = 9e-09
Identities = 44/123 (35%), Positives = 63/123 (51%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 243
MS L W +IRNN+AFL + I K FS E N+ +NS +Y+GL +K A+ V + K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58
Query: 244 GFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAIL 423
G + K K +P K + ++ + +RL K N K RRA+AI+
Sbjct: 59 GVVVSTKNEK--GRPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIV 112
Query: 424 RSQ 432
RSQ
Sbjct: 113 RSQ 115
>UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 192
Score = 38.7 bits (86), Expect(2) = 4e-07
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 196 LIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGA-RRSLFK--AKRLLKA 366
L +A+GV + + G + KK + +P K++ + GA R ++K A R K
Sbjct: 88 LTSNQAIGV-QATENGGVVTITKKPGTSQQPAKSLAVVTYGPGASNRKIYKGVADRTAK- 145
Query: 367 NHYRTDLTKATLRRASAILRSQR 435
N YR DL + + R SAI RSQ+
Sbjct: 146 NGYRADLRQEAVSRVSAIRRSQK 168
Score = 37.1 bits (82), Expect(2) = 4e-07
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKK-ANIKKPFSKEPNNVTNLNSYR 186
+SS L W + RN NA+LVK+ + FS++P NV N +S++
Sbjct: 8 VSSDLVWQLTRNQNAYLVKRNTHGGVQFSRDPLNVLNKHSFK 49
>UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 183
Score = 56.0 bits (129), Expect = 4e-07
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 243
+S+ W ++ NA+LVK+ I S++P + NL+++ +GL H KAVGV
Sbjct: 48 VSNDFIWECTKSTNAYLVKRKGIDTTLSRDPYALNNLSTHYESGLSHDKAVGVHYCKPSG 107
Query: 244 GFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLK-ANHYRTDLTKATLRRASAI 420
++ K K NKP K+ FK + S AK + K Y+ + + RASAI
Sbjct: 108 KICVITKVVKNANKPAKSRHIVEFKP-TKSSRAIAKAVSKTVQGYKDEQIYDAIVRASAI 166
Query: 421 LRS 429
R+
Sbjct: 167 KRA 169
>UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L28 -
Cryptosporidium parvum Iowa II
Length = 127
Score = 48.4 bits (110), Expect = 9e-05
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Frame = +1
Query: 67 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
S+ L W ++ N +F+ K N F+ EP N+ NLN+ +Y+GL ++++ + P+ G
Sbjct: 3 STELLWQCVKKNTSFI--KKNNGFTFTSEPFNIMNLNTLKYSGLAARRSISMDLVPNSNG 60
Query: 247 FTIVYKKAKATNKPV-KNIIRRPFKAGARRSL---FK-AKRLLKAN-HYRTDLTKATLRR 408
+ K AK T K + IR P K ++ +L FK AK+ +K R DL + R
Sbjct: 61 KLV--KNAKITKKNTGSSTIRCPKKLISKVNLSNNFKQAKKTIKNQISSRPDLKNVAIIR 118
Query: 409 ASAILRSQ 432
I +++
Sbjct: 119 YRKIQKAK 126
>UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_150,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 147
Score = 46.8 bits (106), Expect = 3e-04
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVV 225
MS + W +++ NNAFLVK+ + S +P N T + +Y G I K AVGVV
Sbjct: 1 MSQQVLWEVVKGNNAFLVKRNGL--TLSTDPFNNTGVQTYSSTGFISKNAVGVV 52
>UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2;
Dictyostelium discoideum|Rep: 60S ribosomal protein L28
- Dictyostelium discoideum (Slime mold)
Length = 132
Score = 45.2 bits (102), Expect = 8e-04
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Frame = +1
Query: 64 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 243
MS L W II+ NNAFL K++ S EP N+ N NS +Y+GL + + V
Sbjct: 1 MSQDLVWSIIKKNNAFL--KSSHGLTLSAEPGNLRNKNSLKYSGLARRTTIDVAA---VN 55
Query: 244 GFTIVYKK-AKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAI 420
G +V K K P ++ F R + + L A Y +L A L R +
Sbjct: 56 GKVVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTL-ATQYAPELRAAALGRLHRV 114
Query: 421 LRSQR 435
+ R
Sbjct: 115 QSALR 119
>UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9;
Trypanosomatidae|Rep: 60S ribosomal protein L28 -
Trypanosoma cruzi
Length = 146
Score = 44.0 bits (99), Expect = 0.002
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Frame = +1
Query: 67 SSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLN-SYRYNGLIHKKAVGVVENPDRK 243
S+ L W+++R N+ FL K+ I+ S +P N N N + R+ G ++ KA V DR
Sbjct: 4 STDLQWLLVRQNSKFLQKRNGIR--LSSDPFN-NNANWTKRHAGFLNTKAAVVKTKGDR- 59
Query: 244 GFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRA 411
+ K KA NKP + AG S+ + + A R DL RRA
Sbjct: 60 -ILVTTKDGKAGNKPKSMYKKAVMDAGVEASV--VSKAVAA--VRPDLASIASRRA 110
>UniRef50_A4S554 Cluster: Ribosomal protein L28, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L28, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 121
Score = 39.1 bits (87), Expect = 0.055
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Frame = +1
Query: 82 WMIIRNNNAFL-VKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIV 258
W + + +NAF + FS EP NVT S+R +GL + K + + E+ KG
Sbjct: 13 WQVTKKHNAFTRASTSGHGARFSAEPGNVTAEVSFRASGLANAKTIDIREHDGGKG---- 68
Query: 259 YKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQR 435
K AT K + FK+ A AK R DL KA L R SAI ++ R
Sbjct: 69 --KPAATCDGKK--LCGSFKSQAGEVKIAAKA-------RPDLEKAALARISAINKAGR 116
>UniRef50_UPI00006CFBC8 Cluster: hypothetical protein
TTHERM_00487140; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00487140 - Tetrahymena
thermophila SB210
Length = 294
Score = 35.5 bits (78), Expect = 0.68
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 70 SHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNS 180
S L W I++NNNAFLVK + F+ +P +VT N+
Sbjct: 2 SQLVWEIVKNNNAFLVKNNGV--AFTTDPFSVTGRNT 36
>UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing
protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclin,
N-terminal domain containing protein - Tetrahymena
thermophila SB210
Length = 353
Score = 35.5 bits (78), Expect = 0.68
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +1
Query: 58 YKMSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNN-VTN-LNSYRYNGLIHKKAVGVVEN 231
+K S+LNW + N + K NIK K+ NN +TN L + +N I+K+ + ++E
Sbjct: 35 WKKKSYLNWQGCKKINNKQINKQNIKATQIKKKNNQLTNSLLGFSFNQSINKQIIQLLEI 94
Query: 232 PDRKGFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLR 405
I KK + NK +K + + ++ +L K K K + + + K++ +
Sbjct: 95 N-----KIKEKKKETKNKQIKRKEIKQIQYISQSTLSKKKTNKKYTNKQINKKKSSFQ 147
>UniRef50_Q8IM40 Cluster: Putative uncharacterized protein; n=4;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1515
Score = 34.3 bits (75), Expect = 1.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 88 IIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVEN 231
+I+N N F +K A+ KK K +N+++ +Y N I + + V N
Sbjct: 480 LIKNKNVFKIKSADCKKEEKKIDSNISDYMNYEENNKISNRHINNVNN 527
>UniRef50_Q55DQ9 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 959
Score = 33.1 bits (72), Expect = 3.6
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 199 IHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYR 378
+ KK +G + P T+ K+KA N P +NI+ R+L L K NHY
Sbjct: 18 VKKKKLGK-KPPPNPNITVTTFKSKALNMPGQNIVEEKDDLVNHRNLTLKDLLTKLNHYN 76
Query: 379 TDLTK 393
+ K
Sbjct: 77 DQVKK 81
>UniRef50_Q54WB3 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 648
Score = 33.1 bits (72), Expect = 3.6
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Frame = +1
Query: 19 RCVLCYCS---FSN*NYKMSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRY 189
+C L YC+ N N ++ N NNN N + NN N N+
Sbjct: 233 KCGLKYCNPDKIINNNNNNDNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 288
Query: 190 NGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAG 324
N KK + D K +YKK K NKP I +K+G
Sbjct: 289 NKQNEKKRKLIWSEEDSKMLLEIYKKMKTPNKPKNIIASEIYKSG 333
>UniRef50_O97239 Cluster: Putative uncharacterized protein MAL3P2.18;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein MAL3P2.18 - Plasmodium falciparum
(isolate 3D7)
Length = 3933
Score = 33.1 bits (72), Expect = 3.6
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +1
Query: 91 IRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKA 270
I +NN N + NN+ N N+Y Y+ I+K + E + + F + +
Sbjct: 2713 INSNNNNNNNNNNNNNNNNNNNNNIYNNNNYYYSSSINKVSFDDDEKIEVESF-LDHNGV 2771
Query: 271 KATNKPVK-NIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 429
+NK +K IR FK K K LLK ++ T +K T++++ ++ +
Sbjct: 2772 VGSNKKIKREKIREYFK--------KEKNLLKKLNFMTKFSKNTIKKSMIVMNN 2817
>UniRef50_Q6X493 Cluster: Sensor histidine kinase; n=10;
Streptococcus|Rep: Sensor histidine kinase -
Streptococcus agalactiae
Length = 508
Score = 32.7 bits (71), Expect = 4.8
Identities = 19/101 (18%), Positives = 45/101 (44%)
Frame = +1
Query: 58 YKMSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPD 237
Y ++ H ++ ++R ++K N S+ P + L Y+ + K+ + + + +
Sbjct: 27 YYVTIHQSYRMVRVQEEKILK--NTGYALSRNPQVIQTLKDNHYDQSLQKQMLFLSKKSN 84
Query: 238 RKGFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLL 360
++ K P I +PF+ G +++FK K ++
Sbjct: 85 LDYIVLINLKGIRFTHPDSTKIGKPFQGGDEQAVFKGKAIM 125
>UniRef50_A7HRP5 Cluster: Glutamine synthetase catalytic region;
n=1; Parvibaculum lavamentivorans DS-1|Rep: Glutamine
synthetase catalytic region - Parvibaculum
lavamentivorans DS-1
Length = 461
Score = 32.7 bits (71), Expect = 4.8
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -1
Query: 228 LNDTDGFL-----MDQAIVSIRVEVSHIVGFFAERLFDVRLLHEESVIVADNHPIKMRRH 64
+ + DGF+ +D+A + V S FA +++ L HE V+ A +H I +R
Sbjct: 187 ITELDGFMGLLKEIDEAAAAQGVPASGATAEFAPGQYEINLKHENDVVRAGDHAIMLRHL 246
Query: 63 FVVLIRK 43
+ RK
Sbjct: 247 IGAIARK 253
>UniRef50_Q25893 Cluster: Liver stage antigen; n=41; Plasmodium
falciparum|Rep: Liver stage antigen - Plasmodium
falciparum
Length = 1909
Score = 32.7 bits (71), Expect = 4.8
Identities = 25/99 (25%), Positives = 40/99 (40%)
Frame = +1
Query: 73 HLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFT 252
H+N II+N+ + K+N++ S N + + + L H N + K F
Sbjct: 20 HINGKIIKNSEKDEIIKSNLRSGSSNSRNRINEEKHEKKHVLSHNSYEKTKNNENNKFFD 79
Query: 253 IVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKAN 369
K + T VKN+ + FK+ R LK N
Sbjct: 80 ---KDKELTMSNVKNVSQTNFKSLLRNLGVSENIFLKEN 115
>UniRef50_P49958 Cluster: Uncharacterized protein C14B1.5; n=40;
Eukaryota|Rep: Uncharacterized protein C14B1.5 -
Caenorhabditis elegans
Length = 396
Score = 32.7 bits (71), Expect = 4.8
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -1
Query: 303 DNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIVGFFAERLFDVR 124
D+ + +GC LL++Y + V I N TDG M V+I + +SH++ E R
Sbjct: 92 DDYTAKSMGC-DLLVHYGHSCLVPIQN-TDGIAMLYVFVNIHINLSHLIDCVKENFQGKR 149
Query: 123 LL 118
L+
Sbjct: 150 LV 151
>UniRef50_Q8GCM9 Cluster: ORF228; n=2; Mycoplasma|Rep: ORF228 -
Mycoplasma fermentans
Length = 228
Score = 32.3 bits (70), Expect = 6.3
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Frame = +1
Query: 82 WMIIRNNNAFLVKKANIKKPFSKEP--NNVTNLNSYRYNGLIHKK--AVGVVENPDRKGF 249
WM + N + L+K+ N+K P ++ N+ ++++NG ++++ V V+ N +
Sbjct: 10 WMSLVNKDNLLIKEENLKPKKIVFPLIGSIINVQAFKFNGELYRQWNGVKVLRNTPQHYV 69
Query: 250 TIVYKKAKATNKPVKNIIRRPFKAG--ARRSLFKAKRLLK 363
+Y K K K + R + + S++ A LLK
Sbjct: 70 LFMY-KTKVAETDKKGWVYREYVLWFMPKNSMYNALILLK 108
>UniRef50_A2U4J5 Cluster: Type III restriction enzyme, res subunit;
n=2; Bacillus|Rep: Type III restriction enzyme, res
subunit - Bacillus coagulans 36D1
Length = 1068
Score = 32.3 bits (70), Expect = 6.3
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +1
Query: 109 FLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKP 288
F++ NIK+ + + V ++ R GLI + + + E RKG +++ K T +
Sbjct: 47 FVLAAENIKEAYGT--SQVDRIHMLRREGLIEPELMDIFETLRRKGNQAMHEALKFTTEE 104
Query: 289 VKNIIRRPFK 318
K ++R F+
Sbjct: 105 AKALLRLAFR 114
>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
Ymf77 - Tetrahymena pigmentosa
Length = 1260
Score = 32.3 bits (70), Expect = 6.3
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 76 LNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDR 240
L W+ + NNN FL K N+K + N+ N + + N I +GV++ D+
Sbjct: 161 LFWIKLNNNNIFLKKNNNLKNLKNLNLKNLKNSINNK-NNFIKINEIGVIDKKDK 214
>UniRef50_A6YGE1 Cluster: DNA-directed RNA polymerase; n=1;
Leptosira terrestris|Rep: DNA-directed RNA polymerase -
Leptosira terrestris (Pleurastrum terrestre)
Length = 2003
Score = 31.9 bits (69), Expect = 8.3
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Frame = +1
Query: 112 LVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENP--DRKGFTIVYKKAKA-TN 282
L K I S +P N + Y Y KK +G+ ++ +K F KK +
Sbjct: 124 LKKNQKITDTQSLDPINTKLQSVYNYRMPGQKKNLGLKKSKATSKKFFDFCSKKLLCLST 183
Query: 283 KPVKNIIRRP----FKAGARRSLFKAKRLLKANHYRT 381
+PV N++++ F GAR+ F L + NH +T
Sbjct: 184 EPVNNLLKKTAMFTFSGGARKQSFLGPGLWQNNHNQT 220
>UniRef50_Q23QT9 Cluster: Myb-like DNA-binding domain, SHAQKYF class
family protein; n=1; Tetrahymena thermophila SB210|Rep:
Myb-like DNA-binding domain, SHAQKYF class family
protein - Tetrahymena thermophila SB210
Length = 682
Score = 31.9 bits (69), Expect = 8.3
Identities = 22/92 (23%), Positives = 46/92 (50%)
Frame = +1
Query: 55 NYKMSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENP 234
N S++ N II NNN + ++I + PN++ +S + N L+++ ++ + N
Sbjct: 262 NSSSSNNNNSSIINNNNTNNISASHIHNNITDSPNSIHAASSAQQN-LLNQSSISLGNND 320
Query: 235 DRKGFTIVYKKAKATNKPVKNIIRRPFKAGAR 330
+ + YKK T+ ++ I+ F A ++
Sbjct: 321 NFTTSSNNYKKIPGTS--LQLILNNIFNASSK 350
>UniRef50_Q4PHF4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1042
Score = 31.9 bits (69), Expect = 8.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 300 NVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQA 193
NV R GC+ LLIN EAL ++ FL+++A
Sbjct: 179 NVRLRCCGCIALLINGLEALDEKLFQTLKSFLLNRA 214
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,954,368
Number of Sequences: 1657284
Number of extensions: 7703678
Number of successful extensions: 21079
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 20409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21048
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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