Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E11
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    82   4e-17
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   8.4  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 51/128 (39%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
 Frame = +1

Query: 64  MSSHLNWMIIRNNNAFLVKKANIKK-PFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDR 240
           +S+ L W +IR+NN FLVK+       F++EP NV+  N+ R++GL + KAVGV  N  R
Sbjct: 3   VSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPR 62

Query: 241 KGFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFK--AKRLLKANHYRTDLTKATLRRAS 414
               I     K   KP K   +      + R  +K  A R+ +   YR DL K ++ RAS
Sbjct: 63  GVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTG-YRDDLVKVSVARAS 121

Query: 415 AILRSQRP 438
           AIL SQRP
Sbjct: 122 AILSSQRP 129


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 79  NWMIIRNNNAFLVKKANI 132
           NWM  R  N  L++KAN+
Sbjct: 289 NWMSKRRRNESLIQKANV 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,217
Number of Sequences: 5004
Number of extensions: 33896
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)