Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E11
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 81 5e-16
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 81 6e-16
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 80 1e-15
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667... 29 1.6
03_06_0086 + 31544761-31544961,31546036-31546201,31546568-315466... 29 1.6
09_02_0478 - 9749306-9749382,9749543-9749659,9749711-9750398,975... 29 2.8
08_02_0784 + 21183223-21183654,21183892-21184065,21184158-211842... 28 4.8
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 27 6.4
02_02_0578 + 11745811-11746013,11749902-11750241,11750325-117505... 27 6.4
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 27 8.5
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 81.0 bits (191), Expect = 5e-16
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 8/126 (6%)
Frame = +1
Query: 76 LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
L W +++ NN+FLVK+ N K FSKEPNN+ N++SY+++GL +KK V V ++
Sbjct: 8 LVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTVQPASGKET 67
Query: 247 FTIV-YKKAKATNKPV----KNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRA 411
++ K + NKP K+++R+ F+ A+ K + N+YR DLTK L R
Sbjct: 68 AVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAK----AVKNQVSDNYYRPDLTKPALARL 123
Query: 412 SAILRS 429
SA+ RS
Sbjct: 124 SAVYRS 129
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 80.6 bits (190), Expect = 6e-16
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Frame = +1
Query: 76 LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
L W I++ NN FLVK+ +N K F+KEPNN+ N++SY+++GL +KK V + + +
Sbjct: 8 LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67
Query: 247 FTIV-YKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAIL 423
++ K K N P K + + R+ K + N+YR DLTK L R S++
Sbjct: 68 AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127
Query: 424 RS 429
RS
Sbjct: 128 RS 129
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 79.8 bits (188), Expect = 1e-15
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Frame = +1
Query: 76 LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
L W I++ NN FLVK+ +N K F+KEPNN+ N++SY+++GL +KK V + + +
Sbjct: 8 LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDA 67
Query: 247 FTIV-YKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAIL 423
++ K K N P K + + R+ K + N+YR DLTK L R S++
Sbjct: 68 AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127
Query: 424 RS 429
RS
Sbjct: 128 RS 129
>06_03_1314 +
29266320-29266346,29266463-29266556,29266663-29266712,
29266798-29266847,29266945-29267053,29267135-29267195,
29267291-29267343,29267629-29267721,29268091-29268166,
29268401-29268508,29268596-29268840
Length = 321
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -1
Query: 309 TTDNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIV---GFFAER 139
T + V+ F GC L+ A V L+D D F+ Q I++ V+H++ G F +
Sbjct: 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAK 166
Query: 138 LF 133
+F
Sbjct: 167 IF 168
>03_06_0086 +
31544761-31544961,31546036-31546201,31546568-31546626,
31547202-31547320,31547410-31547647,31547718-31547841,
31547989-31548068
Length = 328
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 1 ARGLRTRCVLCYCS 42
A+GL+ CVLCYCS
Sbjct: 262 AKGLKVTCVLCYCS 275
>09_02_0478 -
9749306-9749382,9749543-9749659,9749711-9750398,
9750521-9751161,9751336-9751462
Length = 549
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 351 LGFEKRPPRSSFEWTTDNVLYRFIGC 274
L K PP+ S++WT N++Y + C
Sbjct: 243 LAESKIPPQFSYKWTARNLMYETLKC 268
>08_02_0784 +
21183223-21183654,21183892-21184065,21184158-21184265,
21184403-21184457,21184682-21184876,21185291-21185388,
21186133-21186329,21186408-21186678
Length = 509
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +1
Query: 106 AFLVKKANIKKPFSKEPNNVTNLNSYRYNGLI 201
AF+V+KA+ + +S ++V LNSY Y+GL+
Sbjct: 438 AFIVQKASNQTEYSD--SSVPYLNSYYYSGLV 467
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 97 NNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
N A + K KKP ++P +Y GL+ KK+ N + G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523
>02_02_0578 +
11745811-11746013,11749902-11750241,11750325-11750543,
11751043-11751102,11751262-11751417,11751518-11751611,
11751914-11751927
Length = 361
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 189 VSIRVEVSHIVGFFAERLFDVRLLHEESVIV 97
V +++++S++ GF + F RL EESVIV
Sbjct: 325 VMVKLDLSYLDGFHDDMDFCCRLAKEESVIV 355
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 291 KEHYPSSIQSWSEEVS 338
K HYPS I SW E++S
Sbjct: 305 KHHYPSPIVSWIEDLS 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,151,542
Number of Sequences: 37544
Number of extensions: 201594
Number of successful extensions: 429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -