Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E11
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)        58   4e-09
SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0)                29   1.6  
SB_32049| Best HMM Match : RVT_1 (HMM E-Value=6.7e-15)                 29   2.8  
SB_29517| Best HMM Match : Transposase_33 (HMM E-Value=6.9)            27   6.6  

>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
          Length = 90

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 32/75 (42%), Positives = 42/75 (56%)
 Frame = +1

Query: 214 VGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTK 393
           VGV   P  KG  I  +K KA NKP K + +      +RR+L   + +   N+YR DL  
Sbjct: 2   VGVDAAPSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKD 61

Query: 394 ATLRRASAILRSQRP 438
             +RRA AILRSQ+P
Sbjct: 62  PAMRRACAILRSQKP 76


>SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0)
          Length = 739

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = -1

Query: 324 SSFEWTTDNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIVGFFA 145
           S F    D+ +  ++GC  +     EAL+    N+ D    D +++ ++     IV  FA
Sbjct: 557 SDFIAPRDSGIKDYVGCFAVTCLGAEALAEEYQNELD----DYSVIMVKALADRIVEAFA 612

Query: 144 ERLFDVRLLH------EESVIVADNHPIK 76
           E L +    H      EES+   D H I+
Sbjct: 613 EELHEQVRKHYWGYCGEESLDTKDLHRIR 641


>SB_32049| Best HMM Match : RVT_1 (HMM E-Value=6.7e-15)
          Length = 716

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
 Frame = -1

Query: 297 VLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIVGFFAERLFDVRLL 118
           +L+ F  C  L I+ +       L  +   L D A+ ++  +    +G   ++     L 
Sbjct: 548 LLFNFTKCETLRISRKRTSEAPSLAISPYLLGDDALANVTTQKD--LGVTVDKTLSWSL- 604

Query: 117 HEESVIVADNHPIK-MRRHFVVLIRKTTITQYTT 19
           H E V+   N  +  +RRH  VL+    +  YTT
Sbjct: 605 HTEKVVAKANRMLGFLRRHCAVLVSDPKLLLYTT 638


>SB_29517| Best HMM Match : Transposase_33 (HMM E-Value=6.9)
          Length = 201

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 327 RSSFEWTTDNVLYRFIGCLGLLINY 253
           +   +W+ D V+ RFIG L LL +Y
Sbjct: 117 KEDLDWSKDKVVDRFIGLLQLLRDY 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,834
Number of Sequences: 59808
Number of extensions: 258549
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)