Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E11
(501 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A) 83 1e-16
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn... 82 2e-16
At3g18940.1 68416.m02404 clast3-related contains Prosite PS00626... 29 1.8
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 29 2.3
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote... 29 2.3
At5g01230.1 68418.m00029 FtsJ-like methyltransferase family prot... 28 3.1
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 27 5.4
At4g31270.1 68417.m04438 expressed protein 27 9.4
>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
Length = 143
Score = 82.6 bits (195), Expect = 1e-16
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Frame = +1
Query: 76 LNWMIIRNNNAFLVK---KANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
L W I++NNN FLVK + N K FSKE NN+TN++SY+++GL +KK V + +
Sbjct: 8 LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67
Query: 247 FTIVYKKAKATNKPVKNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILR 426
+ K K NKP ++ + K R + N+YR DL KA L R SAI +
Sbjct: 68 VVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISK 127
Query: 427 SQR 435
R
Sbjct: 128 GLR 130
>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
protein chromosome II BAC F6F22 - Arabidopsis
thaliana,PID:g3687251
Length = 143
Score = 82.2 bits (194), Expect = 2e-16
Identities = 51/127 (40%), Positives = 73/127 (57%), Gaps = 7/127 (5%)
Frame = +1
Query: 76 LNWMIIRNNNAFLVK---KANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 246
L W I++ NN FLVK + N K FSKE NN+ N+NSY+++GL +KK V + +G
Sbjct: 8 LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQG 67
Query: 247 FTIVYKKAKATNKPV----KNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRAS 414
+ K K NKP K+I+++ F +R S A +++ N+YR DL KA L R S
Sbjct: 68 VVLGTTKTKRQNKPKLSVNKSILKKEF---SRMSKVVANQVVD-NYYRPDLKKAALARLS 123
Query: 415 AILRSQR 435
AI + R
Sbjct: 124 AISKGLR 130
>At3g18940.1 68416.m02404 clast3-related contains Prosite PS00626:
Regulator of chromosome condensation (RCC1) signature 2;
similar to Clast3 protein (GI:9857631) [Mus musculus]
Length = 281
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 1 ARGLRTRCVLCYCS 42
ARGL+ C+LCYCS
Sbjct: 215 ARGLKMTCLLCYCS 228
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -1
Query: 273 LGLLINYREALSVRILN-DTDGFLMDQAI-VSIRVEVSHIVG 154
+ +LI YRE +S+ LN GFL++ + + + V+V +VG
Sbjct: 341 MNILIGYREMISLTKLNAKKGGFLVNNKVKIVVEVDVLQVVG 382
>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
contains Pfam domain PF03194: LUC7 N_terminus
Length = 402
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 73 HLNWMIIRNN-NAFLVKKANIKKPFSKEPNN 162
HL +M++R+ L +KANI+K SKE N+
Sbjct: 295 HLGYMLVRDKLTELLDEKANIRKERSKERNS 325
>At5g01230.1 68418.m00029 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 309
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -1
Query: 309 TTDNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIV---GFFAER 139
T + V+ F GC L+ A V L+D D F+ Q I++ V+HI+ G F +
Sbjct: 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAK 166
Query: 138 LF 133
+F
Sbjct: 167 IF 168
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 27.5 bits (58), Expect = 5.4
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = +1
Query: 118 KKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKP--- 288
K+++ ++ KEP+ T R N KKA V E RK KK + KP
Sbjct: 770 KQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKPKHD 829
Query: 289 ---VKNIIRRPFKAGARRSLFKAKR 354
V N +P K ++ K+K+
Sbjct: 830 EEEVPNETEKPEKKKKKKREGKSKK 854
>At4g31270.1 68417.m04438 expressed protein
Length = 294
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 225 NDT-DGFLMDQAIVSIRVEVSHIVGFFAERLFDVRLLHE 112
N+T DG MD + S+R + ++G +E + + LHE
Sbjct: 250 NETKDGVSMDDKLKSVRQQGDELIGCLSEIVSTLNRLHE 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,284,779
Number of Sequences: 28952
Number of extensions: 174010
Number of successful extensions: 445
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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