Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E10
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 29 0.58
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 1.8
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 27 1.8
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 26 3.1
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 3.1
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 4.1
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 26 4.1
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 26 4.1
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 25 5.4
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 25 5.4
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 25 7.2
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 9.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 9.5
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.5
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2... 25 9.5
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 28.7 bits (61), Expect = 0.58
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 248 EQIDDGKSLQIIYQKLVAAFSSLSQYIPSQVTGYAASGPTSWTSYLFS-PASIPVWS 415
E I G +L + K + + ++P V Y+A S+ ++F+ P ++PVW+
Sbjct: 125 ENILYGSNLSSLLSKTTHSILDILAWVPYGVMHYSAPFIISFILFIFAPPGTLPVWA 181
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 262 IVDLFRAEFLGYVFIQSFSEFSELLVGKYLEESCVTLIVEC 140
+V+ R+ Y+ + +E +E + LEES V+ ++EC
Sbjct: 125 VVNERRSSISIYILCRVLTEIAETIPSNALEESTVSCLLEC 165
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 118 FTKRPTNCILQSMLRNFLPNTSQQGV 195
F + C+LQ ++R+FL NTS + +
Sbjct: 154 FHNKKERCLLQFVIRDFLGNTSMENL 179
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 131 QLIAFYNQCYATFFQIL 181
QLIAFY +C+A F+ +
Sbjct: 253 QLIAFYRRCFAVHFEFV 269
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 502 SWSVGTNQSKQVGIVSRYQLFEQT 431
+W+ G SK++G V R +F+QT
Sbjct: 507 NWNAGLLYSKRLGPVGRAMIFQQT 530
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 128 DQLIAFYNQCYATFFQILPNKEFREFAEALNEY 226
D LI QC +LPN++ E A+ Y
Sbjct: 473 DALIDVATQCLDNLLSVLPNEDLMEIADKRPSY 505
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 26 PGKITQVYEEL--VKLINNMPIIEAIKEKWNEGLPKDQ 133
P + + Y++L ++ NN+P + + E W E L D+
Sbjct: 5 PAQNKKQYDDLADIEAQNNVPNTQEVLEAWQESLDSDE 42
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 301 CNQLLINYLQ*FSIVDLFRAEFLGYVFIQSFSEFSELLVGK 179
C + I+YL FS+ DLF A F Q F S +++ K
Sbjct: 370 CLDMAISYLMEFSLEDLFVAS----NFYQPFDSISSMVLSK 406
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 141 HSTINVTQLSSKYFPTRSSENS 206
HST NVT ++ P SS NS
Sbjct: 177 HSTANVTSTGQEHAPDSSSTNS 198
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 401 IPVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSIKPLDEMP 529
I + +A SLL+ L S P +L V R SI PL+E P
Sbjct: 286 IEIVQSNALPSLLRLLRSSYLPLILASVACIRNISIHPLNESP 328
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 126 FGKPSFHFSLMASMIGMLFISFTSSSYT*VIFPGSSFS 13
+ KPS L + +L + T SSY +PG SF+
Sbjct: 81 YPKPSAFLELGKPRLTVLVVLSTMSSYALAPYPGLSFN 118
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 290 KLVAAFSSLSQYIPSQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLK 442
K+ F+ + + P+ +G+ + +WT Y+ P S + WS+++
Sbjct: 560 KMFKIFNFIREQYPALKSGWKSVKLRNWTEYVHFPNSGKTPTEVGVWSIVR 610
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 297 LQRSVHSRNTYRPRSPVMLLLDLHHGLVICSLLRASRYGLATRHG 431
+ SVH + PR PV D H+G + + LA+ HG
Sbjct: 343 IDSSVHCWDLRSPRFPVNSFYDWHNGATQVKWNYKNPHILASSHG 387
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 9.5
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Frame = +2
Query: 212 ALNEYVTKKLRSEQIDDGKSLQIIY---QKLVAAFSSLSQYIPSQVTGYAASGPTSWTS- 379
+++EY+ R + SL ++Y L A + + + S +TG
Sbjct: 496 SISEYLLSSQRDVMLAVEHSLLLLYLNMDDLAAGTKNAKELLESGLTGVEDIKDVLIQKK 555
Query: 380 --YLFSPASIPVWSGDASWSLLKQLISGDYPDL-----LTLVRTYRPRSIKP 514
YL S V D K+LI+GDY D L +R Y I+P
Sbjct: 556 EYYLLSVLLATVRDHDGVLQTWKKLITGDYEDRRFNDGLIKIREYLVNDIEP 607
>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 2 HEAQLKELPGKITQVYEELVKLINNMPIIEAIKEKWNEGLPKDQLIAFY 148
H +K P K+ + E L +N I A+K ++ KD++ FY
Sbjct: 158 HSNVVKNQPIKLCKKTEGGTNLDHNKSINGAVKSGTSKSANKDRIYVFY 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,390
Number of Sequences: 5004
Number of extensions: 48791
Number of successful extensions: 179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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