Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E10
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566... 34 0.062
03_03_0101 - 14431327-14432390,14432599-14432731 31 0.77
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 30 1.0
03_02_0373 - 7865708-7866310,7869547-7870443 28 4.1
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 4.1
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 28 5.4
06_03_1264 - 28834220-28834816,28834918-28835307 28 5.4
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 28 5.4
03_01_0437 + 3390099-3392570 27 9.5
>02_01_0763 -
5665010-5665202,5665285-5665375,5665460-5666245,
5667745-5668225
Length = 516
Score = 34.3 bits (75), Expect = 0.062
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 71 NNMPIIEAIKEKWNEGLPKDQLIAFYNQCYATFFQILPNKEFREFA-EALNEYVTKKLRS 247
N + +++A+K+ W EG L F+ ++ P R +A E L EY+ K
Sbjct: 266 NRITVLQAVKDIWREG----SLRGFFRGNGLNVVKVAPESAIRFYAYEMLKEYIMKSKGE 321
Query: 248 EQIDDGKSLQIIYQKLVAAFSSLSQY 325
+ D G S +++ L A + + Y
Sbjct: 322 NKSDIGTSGRLMAGGLAGAVAQTAIY 347
>03_03_0101 - 14431327-14432390,14432599-14432731
Length = 398
Score = 30.7 bits (66), Expect = 0.77
Identities = 25/77 (32%), Positives = 34/77 (44%)
Frame = +2
Query: 179 LPNKEFREFAEALNEYVTKKLRSEQIDDGKSLQIIYQKLVAAFSSLSQYIPSQVTGYAAS 358
LP + E N Y+ KKLR ID K +AA SS + P+ T AAS
Sbjct: 129 LPGRTDNEVKNFWNSYIKKKLRDRGIDPAT------HKPLAADSSAT---PTNTTAAAAS 179
Query: 359 GPTSWTSYLFSPASIPV 409
T+ +FS A + +
Sbjct: 180 RSTATCRAVFSDAELQI 196
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 359 GPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDY 463
G + + YLF PA +P GD W LLK +I+ ++
Sbjct: 192 GGSGLSKYLFPPAKMPKGGGD--WPLLKDMIAQNH 224
>03_02_0373 - 7865708-7866310,7869547-7870443
Length = 499
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 385 VLSCEHPGMVWRRVMEFAQTADIWRLSRLA 474
+L EHPG+ WR + F+ TA++ RLA
Sbjct: 118 LLGLEHPGVRWRAIRRFS-TAELLAPRRLA 146
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 233 KKLRSEQIDDGKSLQIIYQKLVAAFSSLSQYIPSQ 337
KK+ E D+G+S + YQK AA SS S +P Q
Sbjct: 399 KKMTGEHQDNGESALVPYQKAPAATSS-SALVPIQ 432
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 344 GYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYP 466
G GP SW + S A+ W AS LK L G P
Sbjct: 96 GIMGGGPGSWPALAESAAARGSWPKSASSDSLKSLSDGSAP 136
>06_03_1264 - 28834220-28834816,28834918-28835307
Length = 328
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 248 PSGVSWLRIHSELQRIL 198
P+GV WLR HS L +L
Sbjct: 83 PAGVDWLRSHSRLDHVL 99
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 356 SGPTSWTSYLFSPASI--PVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSIKPLDEMP 529
S SW S + P+ ++ W LL+ +S D PDLL V+ P ++ + MP
Sbjct: 345 SSRISWFMGTVSAVQVADPIRWPNSPWRLLQ--VSWDEPDLLQNVKRVSPWLVELVSNMP 402
Query: 530 A 532
A
Sbjct: 403 A 403
>03_01_0437 + 3390099-3392570
Length = 823
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 252 RSTMENHCK*FI----KSWLQRSVHSRNTYRPRSPVMLLLDLHHGLVICSLLRASRYGLA 419
R TM N + I K W +R+V N +R R + + +H+ +V+C++ RA R+ L
Sbjct: 103 RDTMSNRERTIILKEQKDW-RRAVEIFNWFRRRRRHEVNV-IHYNVVLCAVGRARRWDLV 160
Query: 420 TR 425
R
Sbjct: 161 AR 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,139
Number of Sequences: 37544
Number of extensions: 302565
Number of successful extensions: 886
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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