Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E10
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25753| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)                    29   1.8  
SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)                         29   2.4  
SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25)                   29   3.2  
SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_48039| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)                 27   9.7  

>SB_25753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = +2

Query: 188 KEFREFAEALNEYVTKKLRSEQIDD---GKSLQIIYQKLVAAFSSLSQYIPSQVTGYAAS 358
           +E+  F + +N+ + KKL  E+  D    + +   Y+ L       +  IP Q T     
Sbjct: 226 REYNTFEQGINKVLAKKLIDERTRDYMNARRMAKEYEALSRGLIKGAPSIPPQGTPEEMK 285

Query: 359 GPTSWTSYLFSPASIPVWSGD 421
               W  Y+F   S P+W  D
Sbjct: 286 QLQLWKKYIFWERSNPLWIDD 306


>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
          Length = 492

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 356 SGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLLTL 481
           +GP    S L SPA +P+++  + W  L++  S + P L TL
Sbjct: 413 TGPDLKFSKLESPAKLPIYTSASDWQYLEECTSKE-PHLSTL 453


>SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)
          Length = 1329

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 215 LNEYVTKKLRSEQIDDGKSLQIIYQKLVAAFSSLS 319
           LNE V  +   E+I +GKS++I+YQ +    S LS
Sbjct: 456 LNEVVDFEKDVEKIKEGKSVEIMYQVVTGLKSDLS 490


>SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25)
          Length = 389

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -1

Query: 367 CRSRSSITGDLGRYVLRE*TERCNQLLINYLQ*FSIVDLFRAEFLG--YVFIQSFSEFSE 194
           C  R +  G +G Y++RE   +     ++YL    IV    +   G  Y+  + F   S+
Sbjct: 64  CEERLAADGRIGAYLVRESDRKPATFSLSYLGKNGIVHFRISNVCGDYYIGGRQFDSLSD 123

Query: 193 LLVGKYLEESCV 158
            L+G Y   SC+
Sbjct: 124 -LIGYYTSWSCL 134


>SB_48082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 276 CNDFPSSICSERSF 235
           CND PSS+C E+ F
Sbjct: 572 CNDLPSSVCPEKVF 585


>SB_48039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 291 SWLQRSVHSRNTYRPRSPVML 353
           SWL R VH+ N+  P  P++L
Sbjct: 26  SWLARGVHASNSCSPGDPLVL 46


>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 149 NQCYATFFQILPNKEFREFAEALNEYVTKKLRSEQIDDGKSLQIIYQKLVAAFSSL 316
           N C+A + Q   NK   E  E + ++   K+R     DG  LQ++   ++ + SSL
Sbjct: 39  NGCHAGYRQ--DNKTIDEVVEYI-QHNYNKVRRPSTPDGGPLQVVVDLVIISMSSL 91


>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
          Length = 1083

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 89   EAIKEKWNEG--LPKDQLIAFYNQCYATFFQILPNKEFREFAEALNEYVTKKLRSEQIDD 262
            + +KEK   G  L  D+++      Y  F  ++P+ E R +AE  +     K+  E ++D
Sbjct: 856  DLMKEKLQSGFQLSMDEVVGESPMIYGDF--MIPSAENRIYAEITDYNKMVKILEEYLED 913

Query: 263  GKSLQIIYQKLV 298
               +     KLV
Sbjct: 914  YNQINTAQMKLV 925


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,151,787
Number of Sequences: 59808
Number of extensions: 359159
Number of successful extensions: 877
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)