Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E10
         (538 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M23612-1|AAA35865.1|  870|Homo sapiens GTPase-activating protein...    30   6.0  
M23379-1|AAA52517.1| 1047|Homo sapiens GTPase-activating protein...    30   6.0  
BC054891-1|AAH54891.1|  313|Homo sapiens RASA1 protein protein.        30   6.0  
BC033015-1|AAH33015.1| 1047|Homo sapiens RAS p21 protein activat...    30   6.0  
BC020761-1|AAH20761.1|  317|Homo sapiens Unknown (protein for IM...    30   6.0  
AB209106-1|BAD92343.1|  871|Homo sapiens RAS p21 protein activat...    30   6.0  

>M23612-1|AAA35865.1|  870|Homo sapiens GTPase-activating protein
           protein.
          Length = 870

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -1

Query: 343 GDLGRYVLRE*TERCNQLLINYLQ*FSIVDLFR-AEFLG--YVFIQSFSEFSELLVGKYL 173
           G  G Y++RE   R    ++++L   ++V+ FR     G  Y+  + FS  S+ L+G Y 
Sbjct: 22  GKSGSYLIRESDRRPGSFVLSFLSQMNVVNHFRIIAMCGDYYIGGRRFSSLSD-LIGYYS 80

Query: 172 EESCV 158
             SC+
Sbjct: 81  HVSCL 85


>M23379-1|AAA52517.1| 1047|Homo sapiens GTPase-activating protein
           protein.
          Length = 1047

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -1

Query: 343 GDLGRYVLRE*TERCNQLLINYLQ*FSIVDLFR-AEFLG--YVFIQSFSEFSELLVGKYL 173
           G  G Y++RE   R    ++++L   ++V+ FR     G  Y+  + FS  S+ L+G Y 
Sbjct: 199 GKSGSYLIRESDRRPGSFVLSFLSQMNVVNHFRIIAMCGDYYIGGRRFSSLSD-LIGYYS 257

Query: 172 EESCV 158
             SC+
Sbjct: 258 HVSCL 262


>BC054891-1|AAH54891.1|  313|Homo sapiens RASA1 protein protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -1

Query: 343 GDLGRYVLRE*TERCNQLLINYLQ*FSIVDLFR-AEFLG--YVFIQSFSEFSELLVGKYL 173
           G  G Y++RE   R    ++++L   ++V+ FR     G  Y+  + FS  S+ L+G Y 
Sbjct: 22  GKSGSYLIRESDRRPGSFVLSFLSQMNVVNHFRIIAMCGDYYIGGRRFSSLSD-LIGYYS 80

Query: 172 EESCV 158
             SC+
Sbjct: 81  HVSCL 85


>BC033015-1|AAH33015.1| 1047|Homo sapiens RAS p21 protein activator
           (GTPase activating protein) 1 protein.
          Length = 1047

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -1

Query: 343 GDLGRYVLRE*TERCNQLLINYLQ*FSIVDLFR-AEFLG--YVFIQSFSEFSELLVGKYL 173
           G  G Y++RE   R    ++++L   ++V+ FR     G  Y+  + FS  S+ L+G Y 
Sbjct: 199 GKSGSYLIRESDRRPGSFVLSFLSQMNVVNHFRIIAMCGDYYIGGRRFSSLSD-LIGYYS 257

Query: 172 EESCV 158
             SC+
Sbjct: 258 HVSCL 262


>BC020761-1|AAH20761.1|  317|Homo sapiens Unknown (protein for
           IMAGE:4733187) protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -1

Query: 343 GDLGRYVLRE*TERCNQLLINYLQ*FSIVDLFR-AEFLG--YVFIQSFSEFSELLVGKYL 173
           G  G Y++RE   R    ++++L   ++V+ FR     G  Y+  + FS  S+ L+G Y 
Sbjct: 22  GKSGSYLIRESDRRPGSFVLSFLSQMNVVNHFRIIAMCGDYYIGGRRFSSLSD-LIGYYS 80

Query: 172 EESCV 158
             SC+
Sbjct: 81  HVSCL 85


>AB209106-1|BAD92343.1|  871|Homo sapiens RAS p21 protein activator
           1 isoform 1 variant protein.
          Length = 871

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -1

Query: 343 GDLGRYVLRE*TERCNQLLINYLQ*FSIVDLFR-AEFLG--YVFIQSFSEFSELLVGKYL 173
           G  G Y++RE   R    ++++L   ++V+ FR     G  Y+  + FS  S+ L+G Y 
Sbjct: 232 GKSGSYLIRESDRRPGSFVLSFLSQMNVVNHFRIIAMCGDYYIGGRRFSSLSD-LIGYYS 290

Query: 172 EESCV 158
             SC+
Sbjct: 291 HVSCL 295


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,671,925
Number of Sequences: 237096
Number of extensions: 1702046
Number of successful extensions: 3485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3485
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)