Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E10
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 28 3.7
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 28 3.7
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 4.9
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 28 4.9
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 28 4.9
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p... 27 8.6
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 8.6
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 28.3 bits (60), Expect = 3.7
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +2
Query: 32 KITQVYEELVKLINNMPIIEAIKEKWNEGLPKDQLIAFYNQCYATFFQILPNKEFR-EFA 208
KI ++ EEL + NN+ +E +EK L ++ Y + T L E R EFA
Sbjct: 189 KIVELEEELRVVGNNLKSLEVSEEK---ALQRED---SYEEQIRTVSSRLKEAETRAEFA 242
Query: 209 EALNEYVTK---KLRSEQIDDGKSLQIIYQKLVAAFSSLSQY 325
E + + K +L E + + + + I ++L + F LS Y
Sbjct: 243 ERSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQELSGY 284
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 28.3 bits (60), Expect = 3.7
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +2
Query: 32 KITQVYEELVKLINNMPIIEAIKEKWNEGLPKDQLIAFYNQCYATFFQILPNKEFR-EFA 208
KI ++ EEL + NN+ +E +EK L ++ Y + T L E R EFA
Sbjct: 189 KIVELEEELRVVGNNLKSLEVSEEK---ALQRED---SYEEQIRTVSSRLKEAETRAEFA 242
Query: 209 EALNEYVTK---KLRSEQIDDGKSLQIIYQKLVAAFSSLSQY 325
E + + K +L E + + + + I ++L + F LS Y
Sbjct: 243 ERSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQELSGY 284
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 27.9 bits (59), Expect = 4.9
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 100 REVERRFTKRPTNCILQSMLRNFLPNTSQQGVQRIR*SSE*-IRNQETPLGTDR-RWKII 273
R V R+ + +++F PN Q VQ R ++ I + E + D ++ ++
Sbjct: 386 RHVNRKVATDEHTILRSWAIKDFAPNVKQY-VQIFRAETKMHIEHAEVLICEDEFKYALL 444
Query: 274 ANNLSKAGCSVQFTLAIHTVPG 339
ANN G S TL +HT G
Sbjct: 445 ANNCICPGISTFITLLMHTSRG 466
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 27.9 bits (59), Expect = 4.9
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 100 REVERRFTKRPTNCILQSMLRNFLPNTSQQGVQRIR*SSE*-IRNQETPLGTDR-RWKII 273
R V R+ + +++F PN Q VQ R ++ I + E + D ++ ++
Sbjct: 407 RHVNRKVATDEHTILRSWAIKDFAPNVKQY-VQIFRAETKMHIEHAEVLICEDEFKYALL 465
Query: 274 ANNLSKAGCSVQFTLAIHTVPG 339
ANN G S TL +HT G
Sbjct: 466 ANNCICPGISTFITLLMHTSRG 487
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 27.9 bits (59), Expect = 4.9
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 100 REVERRFTKRPTNCILQSMLRNFLPNTSQQGVQRIR*SSE*-IRNQETPLGTDR-RWKII 273
R V R+ + +++F PN Q VQ R ++ I + E + D ++ ++
Sbjct: 407 RHVNRKVATDEHTILRSWAIKDFAPNVKQY-VQIFRAETKMHIEHAEVLICEDEFKYALL 465
Query: 274 ANNLSKAGCSVQFTLAIHTVPG 339
ANN G S TL +HT G
Sbjct: 466 ANNCICPGISTFITLLMHTSRG 487
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 27.9 bits (59), Expect = 4.9
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 100 REVERRFTKRPTNCILQSMLRNFLPNTSQQGVQRIR*SSE*-IRNQETPLGTDR-RWKII 273
R V R+ + +++F PN Q VQ R ++ I + E + D ++ ++
Sbjct: 407 RHVNRKVATDEHTILRSWAIKDFAPNVKQY-VQIFRAETKMHIEHAEVLICEDEFKYALL 465
Query: 274 ANNLSKAGCSVQFTLAIHTVPG 339
ANN G S TL +HT G
Sbjct: 466 ANNCICPGISTFITLLMHTSRG 487
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 27.9 bits (59), Expect = 4.9
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 100 REVERRFTKRPTNCILQSMLRNFLPNTSQQGVQRIR*SSE*-IRNQETPLGTDR-RWKII 273
R V R+ + +++F PN Q VQ R ++ I + E + D ++ ++
Sbjct: 407 RHVNRKVATDEHTILRSWAIKDFAPNVKQY-VQIFRAETKMHIEHAEVLICEDEFKYALL 465
Query: 274 ANNLSKAGCSVQFTLAIHTVPG 339
ANN G S TL +HT G
Sbjct: 466 ANNCICPGISTFITLLMHTSRG 487
>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
protein F40G12.3 protein.
Length = 1099
Score = 27.1 bits (57), Expect = 8.6
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Frame = +3
Query: 72 TTCQSSKPLKRSGTKVYQKTN*L---HSTINVTQLSSKYF-----PTRSSE 200
T QSS P ++S T Y T HSTI VT+ SSK PT SSE
Sbjct: 655 TVTQSSIPTEKSTTVDYTATTVSTKSHSTITVTEPSSKKSTLTSEPTSSSE 705
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.1 bits (57), Expect = 8.6
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 192 SSENSLKL*MNT*PRNSARNRSTMENHCK*FIKSWLQRSVHSRNTYRPRSPVMLLLDLHH 371
S+ NSLK M+ RNS T + F + Q +++ ++ RP +PV++L LHH
Sbjct: 1563 SAANSLKDEMSLHIRNSNEAPETAK-----FDRKVYQTTLY--DSTRPGTPVLVLNALHH 1615
Query: 372 GLV 380
G V
Sbjct: 1616 GTV 1618
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.1 bits (57), Expect = 8.6
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 192 SSENSLKL*MNT*PRNSARNRSTMENHCK*FIKSWLQRSVHSRNTYRPRSPVMLLLDLHH 371
S+ NSLK M+ RNS T + F + Q +++ ++ RP +PV++L LHH
Sbjct: 1563 SAANSLKDEMSLHIRNSNEAPETAK-----FDRKVYQTTLY--DSTRPGTPVLVLNALHH 1615
Query: 372 GLV 380
G V
Sbjct: 1616 GTV 1618
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.1 bits (57), Expect = 8.6
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 192 SSENSLKL*MNT*PRNSARNRSTMENHCK*FIKSWLQRSVHSRNTYRPRSPVMLLLDLHH 371
S+ NSLK M+ RNS T + F + Q +++ ++ RP +PV++L LHH
Sbjct: 1563 SAANSLKDEMSLHIRNSNEAPETAK-----FDRKVYQTTLY--DSTRPGTPVLVLNALHH 1615
Query: 372 GLV 380
G V
Sbjct: 1616 GTV 1618
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,734,019
Number of Sequences: 27780
Number of extensions: 269159
Number of successful extensions: 795
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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