Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E10
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   3.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   6.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 41  QVYEELVKLINNMPIIEAIKEKW--NEGLPKD 130
           + +EEL +L+    I  AIKEK   + G+ KD
Sbjct: 295 KAFEELEELLGKRNICIAIKEKLVKDSGVAKD 326


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 354 LLDLHHGLVICSLLRASRYGLATRHGVCS 440
           LL L H  V C +L      L+  H  C+
Sbjct: 54  LLPLRHRRVTCDVLSWQSKWLSINHSACA 82


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 308 SSLSQY--IPSQVTGYAASGPTSWTSY 382
           +S+ +Y  IP ++ G+A  GP + +++
Sbjct: 119 TSVEEYAIIPQEIAGFADEGPFTTSAH 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,036
Number of Sequences: 438
Number of extensions: 3401
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)