Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E09
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    28   0.84 
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    27   1.9  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   2.6  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    26   2.6  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    26   3.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.4  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    25   7.8  

>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +2

Query: 86  NLDVSGIDVYFYDFPRNDVETFTIDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKRNEE 265
           N+  S  +  F+DF  + +  F I    K ILS+ + D  +   F  G   +      + 
Sbjct: 169 NIKFSSQNPKFWDFSLDSIAIFDIPSIVKYILSVNSFDSISLVGFSQGAILAFAALSIDT 228

Query: 266 QIRDTFR 286
           ++R++ R
Sbjct: 229 ELRNSVR 235


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +2

Query: 53  SLINCNHDRNLNLDVSGIDVYFYDFPRNDVETFTIDEAAKGILSIENL 196
           S++N NH+     D+ G     + F +  ++    ++ A+G+L + N+
Sbjct: 60  SVVNANHENRPFRDLEGYHFNTFTFLKTLMDKGYTEKEAEGLLEVTNM 107


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 173 GILSIENLDKKNKYIFYVGGFKSHIKKRNEEQIRDTFRNISNSYLIIFDHSDYTN-NRQG 349
           G+ ++EN+DK +  I Y+G         N E+       I +SYL   D     +  ++G
Sbjct: 794 GLFAMENIDKNDMVIEYIGEIIRQRVADNREK-NYVREGIGDSYLFRIDEDVIVDATKKG 852

Query: 350 N 352
           N
Sbjct: 853 N 853


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 413 LLAELPIGGVPANNMHCIG 469
           +L  LP+ GV  N +HC+G
Sbjct: 132 VLLNLPVVGVAKNYLHCVG 150


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 155 IDEAAKGILSIENLDKKN-KYIFYVGGFKSHIKKRNEEQIRDTFR 286
           I+E  + +LSIE +D+K  + ++Y+   ++ +  R     R+T R
Sbjct: 259 INERFQRLLSIEEVDQKRARILYYISLLQAFLFSRRSVGNRETLR 303


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 174  PFAASSIVNVSTSFLGKS*K*TSMPLTS 91
            P  +S++VN STS    S   +S P+TS
Sbjct: 2411 PITSSTVVNTSTSITSSSVLNSSTPITS 2438



 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 174  PFAASSIVNVSTSFLGKS*K*TSMPLTS 91
            P  +SS+VN ST     +   TS P+TS
Sbjct: 1571 PITSSSVVNSSTPITSSTALNTSTPITS 1598


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 143 ETFTIDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKRNEE 265
           E   I E AK   +   L  +  Y  Y G   +  KKR EE
Sbjct: 162 EAKPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRAEE 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,489
Number of Sequences: 5004
Number of extensions: 38555
Number of successful extensions: 214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)