Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E09
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0234 + 1715338-1718233,1718351-1718760 34 0.069
02_05_0250 + 27153048-27154453,27154546-27154885 33 0.12
10_08_0361 + 17207657-17207701,17208850-17209773 30 1.1
07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,723... 29 1.5
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536... 29 2.0
06_03_1302 - 29163974-29166907 29 2.0
03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354... 29 2.0
11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317... 29 2.6
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 27 7.9
>07_01_0234 + 1715338-1718233,1718351-1718760
Length = 1101
Score = 33.9 bits (74), Expect = 0.069
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +2
Query: 260 EEQIRDTFRNISNSYLIIFDHSDYTNNRQGNRKSYARSVKYVHYIGKAVGRLLAELPIGG 439
++ I D+FR +SN + I D S +NN G SY ++ Y+ + + L ++P GG
Sbjct: 641 DDSIPDSFRKLSN--IAILDLS--SNNLSGRIPSYFANLTYLTNVNFSFNNLQGQVPEGG 696
Query: 440 VPAN 451
V N
Sbjct: 697 VFLN 700
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Frame = +2
Query: 68 NHDRNLNLDVSGIDVYFYDFPRNDVETFTIDEAAKGILSIENLDKKNKYIFYVGGFKSHI 247
N D N N D +D F + +ET ++ K + + D+K + + Y G +
Sbjct: 306 NSDSNTNSDSVDVDPSFVAEKKGSIETVVTEDGKKQAMDVVTEDEKKQDVDYEGSSLEEM 365
Query: 248 KKRN----EEQIRDTFRNISNSYLIIFDHSDYTNNRQGNRKSYARSV 376
R+ ++++ F I Y+ + ++T + + R +
Sbjct: 366 PLRSAFSYTHEVKERFNRILKKYVGTHNFHNFTTRTKAEDPAAKRFI 412
>10_08_0361 + 17207657-17207701,17208850-17209773
Length = 322
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +2
Query: 125 FPRNDVETFTIDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKRNEEQIRDTFRNISNSY 304
F N T T+D+ + +IE +DK + +F+ G H+K NE+++ D + ++NS
Sbjct: 24 FTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAG---MHLK--NEDKLAD-YNIMTNSS 77
Query: 305 LIIF 316
+ ++
Sbjct: 78 VDLY 81
>07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,
7232513-7232551,7232734-7234057,7238145-7238189,
7238456-7238498,7238680-7238716,7239035-7239325,
7239634-7239685,7239690-7239773,7240064-7240137,
7240703-7241641
Length = 1169
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 470 GRCSAYYSQVLHLLAIRPTIDQQLFQYSERILLISHSSFCSLACYLCNLSDQI 312
G C Y LH RP + Y+E I+ + SSF + C+L NL +I
Sbjct: 1120 GICMEIY---LHRNGTRPGDPPSILLYAEFIVNLLQSSFLVVPCFLYNLCSKI 1169
>11_06_0762 +
27043460-27044319,27052096-27052912,27052992-27053649,
27053698-27053934,27054091-27054161,27054346-27054441
Length = 912
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 230 GFKSHIKKRNEEQIRDTFRNISNSYLIIFDHSDYTNNRQGNRKSYARSVKYVHY-IGKAV 406
GFK ++ K + I ++ Y ++ D D +QG+ K +A ++ + Y + AV
Sbjct: 27 GFKHNLPKSAKHDIHSLRMDLQIMYSVLRDVVDSRAEQQGHNKLWALELRELSYDVEDAV 86
Query: 407 GRLLAELPIGGVPAN 451
+L L GG+ ++
Sbjct: 87 DTILVRL--GGLESS 99
>06_03_1302 - 29163974-29166907
Length = 977
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 263 EQIRDTFRNISNSYLIIFDHSDYTNN 340
E+I+ TFR + N YL++ D D T++
Sbjct: 260 EEIQRTFRTVGNRYLMVMDDVDDTSS 285
>03_05_0875 -
28434894-28435082,28435173-28435247,28435399-28435490,
28435721-28435835,28436019-28436188,28436237-28436310,
28436397-28436553,28436658-28436730,28436898-28436960,
28437067-28437341,28437710-28437816,28437884-28438788,
28439742-28440032
Length = 861
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +2
Query: 236 KSHIKKRNEEQIRDTFRNISNSYLIIFDHSDYTNNRQGNRKSYARSVKYV 385
K+ K+R EE+ ++ + S++Y+ D +Y N + +RK +S Y+
Sbjct: 383 KAKCKRRPEEEKKEPYSKSSSNYVREEDEENYLENIE-DRKQQEKSAHYI 431
>11_06_0399 -
23129476-23129745,23131040-23131121,23131216-23131711,
23132135-23132699,23132825-23132893
Length = 493
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 359 SFCSLACYLCNLSDQILSGNYLRY 288
S S C+ CN S+ I+SGN L Y
Sbjct: 469 SNASCGCFPCNGSNNIISGNLLNY 492
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 140 VETFTIDEAAKGILSIENLDKKNKYIFYVG--GFKSHIKKRNEEQIR 274
V+ T DEA + +L KKNKY +G G+ H+ + E + R
Sbjct: 174 VKDHTTDEALALSKKMSDLAKKNKYPHRLGSSGYAGHVNQWRETEQR 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,049,611
Number of Sequences: 37544
Number of extensions: 219166
Number of successful extensions: 644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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