Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E09
(479 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12) 30 1.1
SB_4666| Best HMM Match : Exo_endo_phos (HMM E-Value=2.5) 30 1.1
SB_42923| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12) 30 1.1
SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_2395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_27411| Best HMM Match : RVT_1 (HMM E-Value=0.002) 27 6.1
>SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 155 IDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKRNEEQ-IRDTFRNISNSYLIIFDHSDY 331
I GIL+++ D + IF FKSH+KK E+Q RD + S ++L + D+
Sbjct: 112 ISHVTPGILTVDISD--HLPIFCT--FKSHLKKTCEQQSFRDFSKFNSENFLYDMNQLDW 167
Query: 332 TNNRQGNRKSYARSVKYVHYIGKAVGR 412
+ Q + ++ +H I + +
Sbjct: 168 NSLHQSTKTLNEKTEDTIHAIHSVIDK 194
>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
Length = 648
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 155 IDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKRNEEQ-IRDTFRNISNSYLIIFDHSDY 331
I GIL+++ D + IF FKSH+KK E+Q RD + S ++L + D+
Sbjct: 283 ISHVTPGILTVDISD--HLPIFCT--FKSHLKKTCEQQSFRDFSKFNSENFLYDMNQLDW 338
Query: 332 TNNRQGNRKSYARSVKYVHYIGKAVGR 412
+ Q + ++ +H I + +
Sbjct: 339 NSLHQSTKTLNEKTEDTIHAIHSVIDK 365
>SB_4666| Best HMM Match : Exo_endo_phos (HMM E-Value=2.5)
Length = 209
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 155 IDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKRNEEQ-IRDTFRNISNSYLIIFDHSDY 331
I GIL+++ D + IF FKSH+KK E+Q RD + S ++L + D+
Sbjct: 112 ISHVTPGILTVDISD--HLPIFCT--FKSHLKKTCEQQSFRDFSKFNSENFLYDMNQLDW 167
Query: 332 TNNRQGNRKSYARSVKYVHYIGKAVGR 412
+ Q + ++ +H I + +
Sbjct: 168 NSLHQSTKTLNEKTEDTIHAIHSVIDK 194
>SB_42923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 155 IDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKRNEEQ-IRDTFRNISNSYLIIFDHSDY 331
I GIL+++ D + IF FKSH+KK E+Q RD + S ++L + D+
Sbjct: 112 ISHVTPGILTVDISD--HLPIFCT--FKSHLKKTCEQQSFRDFSKFNSENFLYDMNQLDW 167
Query: 332 TNNRQGNRKSYARSVKYVHYIGKAVGR 412
+ Q + ++ +H I + +
Sbjct: 168 NSLHQSTKTLNEKTEDTIHAIHSVIDK 194
>SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
Length = 623
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 155 IDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKRNEEQ-IRDTFRNISNSYLIIFDHSDY 331
I GIL+++ D + IF FKSH+KK E+Q RD + S ++L + D+
Sbjct: 485 ISHVTPGILTVDISD--HLPIFCT--FKSHLKKTCEQQSFRDFSKFNSENFLYDMNQLDW 540
Query: 332 TNNRQGNRKSYARSVKYVHYIGKAVGR 412
+ Q + ++ +H I + +
Sbjct: 541 NSLHQSTKTLNEKTEDTIHAIHSVIDK 567
>SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 155 IDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKRNEEQ-IRDTFRNISNSYLIIFDHSDY 331
I GIL+++ D + IF FKSH+KK E+Q RD + S ++L + D+
Sbjct: 99 ISHVTPGILTVDISD--HLPIFCT--FKSHLKKTCEQQSFRDFSKFNSENFLYDMNQLDW 154
Query: 332 TNNRQGNRKSYARSVKYVHYIGKAVGR 412
+ Q + ++ +H I + +
Sbjct: 155 NSLHQSTKTLNEKTEDTIHAIHSVIDK 181
>SB_2395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 77 RNLNLDVSGIDVYFYDFPRNDVETFTIDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKR 256
+N+ ++ + ID Y PR+D++ +T+ A I+ ++N K G K H K +
Sbjct: 34 KNVGMEENLIDAEGY--PRDDIDVYTVRIARNRIICLQNDHKAKMKEIEEGLHKVHAKAK 91
Query: 257 NEEQIRDT 280
++ T
Sbjct: 92 ENKRENGT 99
>SB_27411| Best HMM Match : RVT_1 (HMM E-Value=0.002)
Length = 698
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 161 EAAKGILSIENLDKKNKYIFYVGGFKSH 244
+A KG+ +ENL KK+ YIF + + H
Sbjct: 670 QAEKGVPIVENLLKKSGYIFGIVRLQKH 697
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,983
Number of Sequences: 59808
Number of extensions: 269679
Number of successful extensions: 749
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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