Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E09
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44060.1 68416.m04720 F-box family protein contains F-box dom...    32   0.17 
At1g19790.1 68414.m02475 lateral root primordium (LRP) protein-r...    31   0.30 
At3g44090.1 68416.m04723 F-box family protein contains F-box dom...    28   2.8  
At5g61730.1 68418.m07746 ABC transporter family protein contains...    28   3.7  
At4g23160.1 68417.m03342 protein kinase family protein contains ...    27   6.5  
At1g10560.1 68414.m01189 armadillo/beta-catenin repeat family pr...    27   6.5  
At4g01360.1 68417.m00176 expressed protein                             27   8.7  

>At3g44060.1 68416.m04720 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 83  LNLDV-SGIDVYFYDFPRNDVETFTIDEAAKGILSIENLDKKNKYI 217
           L LD  S +D+Y+ D PR++   F +D  AK  L +  ++  N+ +
Sbjct: 217 LTLDTPSVVDLYYSDSPRHNAPLFHLDSLAKVTLDLHFIENNNREV 262


>At1g19790.1 68414.m02475 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 345

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +2

Query: 215 IFYVGGFKSHIKKRNEEQIRDTFRNISNSYLIIFDHSDYTNNR 343
           +FY+GG + H  K++  Q +D   + SN+YL ++    Y NN+
Sbjct: 4   LFYLGG-RDH-NKQDHHQEKDHNEDKSNNYLYLYKDEIYNNNK 44


>At3g44090.1 68416.m04723 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 449

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 83  LNLDVSGI-DVYFYDFPRNDVETFTIDEAAKGILSIENLDKKNKYIFYVGGFKSHIKK-R 256
           L LD   + D+Y+ DFPR       +D  AK  L + +L+  ++ +      K+ I + R
Sbjct: 243 LTLDTPNVVDLYYSDFPRPIAPHCHLDSLAKVELDLHSLEDDSRQVQNDADVKNLISEIR 302

Query: 257 NEEQIRDTF 283
           N + +  T+
Sbjct: 303 NVKTLHLTY 311


>At5g61730.1 68418.m07746 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter
          Length = 940

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 210 LFFLSKFSMERIPFAASSIVNVSTS 136
           LFFL +F+M  + FA SSI++ S+S
Sbjct: 314 LFFLFQFNMIGLAFALSSIISKSSS 338


>At4g23160.1 68417.m03342 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 1262

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -1

Query: 473 CGRCSAYYSQVLHLLAIRPTIDQQLFQYSERILLISHSSFCSLACY 336
           C  C A+   V   L   P   + +F Y E IL  SH +F S   Y
Sbjct: 691 CSNCVAF--SVNESLTRCPNQREAVFYYEECILRYSHKNFLSTVTY 734


>At1g10560.1 68414.m01189 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 697

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 146 TFTIDEAAKGILSIENLDKKNKYIFYVGGFKSHIKKRNEEQIRDTFRNISNSYLIIFDHS 325
           TF   E ++ I  +  LD   +    +  FKS     N++  R+T R I N  L++F+  
Sbjct: 14  TFPTVEPSESISIVTLLDSLIQLAGDILTFKSKHFSTNKQSFRETLRRIQN-LLVVFEEI 72

Query: 326 DY---TNNRQGNRKSYARSVKYVH 388
                 + R  +  + A S+K +H
Sbjct: 73  RIRIRNSRRYFHDSAAASSLKEIH 96


>At4g01360.1 68417.m00176 expressed protein 
          Length = 348

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 247 DM*LEAADIEYVFIFLVQILNGKDTLCRFINSERFHVISGEI 122
           D+ +  +D+E  FI++    + K  LC    SE +H+  G +
Sbjct: 80  DLEVPVSDLEENFIYIFSDFSLKRELCNAFTSEIYHLEHGNL 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,023,531
Number of Sequences: 28952
Number of extensions: 190152
Number of successful extensions: 536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)