Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E08
(490 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 243 1e-63
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 148 8e-35
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 130 2e-29
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 107 1e-22
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 105 4e-22
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 104 9e-22
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 103 3e-21
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 99 6e-20
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 97 2e-19
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 95 7e-19
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 90 2e-17
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 90 3e-17
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 89 4e-17
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 89 5e-17
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 87 3e-16
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 85 6e-16
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 84 1e-15
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 82 6e-15
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 80 2e-14
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 77 2e-13
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 70 3e-11
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 3e-08
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 1e-06
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 50 3e-05
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 2e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 3e-04
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 46 3e-04
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 46 6e-04
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 45 8e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 45 8e-04
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 45 8e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 45 8e-04
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 44 0.002
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 42 0.006
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.006
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.010
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 41 0.017
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 41 0.017
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.022
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 40 0.022
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.030
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.030
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.030
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 40 0.030
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 40 0.030
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 40 0.039
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 40 0.039
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 39 0.069
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 39 0.069
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.069
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 38 0.091
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 38 0.091
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.12
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 38 0.12
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 38 0.16
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 38 0.16
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 38 0.16
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.16
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 38 0.16
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 37 0.21
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.37
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 36 0.48
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.48
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 0.48
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.64
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 35 0.84
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.1
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 35 1.1
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 35 1.1
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 35 1.1
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 35 1.1
UniRef50_Q2UJB9 Cluster: Predicted protein; n=1; Aspergillus ory... 34 1.5
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 34 2.0
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 33 2.6
UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep: CG... 33 3.4
UniRef50_A0BWL3 Cluster: Chromosome undetermined scaffold_132, w... 33 3.4
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 33 3.4
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 4.5
UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like p... 32 6.0
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 32 6.0
UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1; Met... 32 6.0
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 32 7.9
UniRef50_A3X9S8 Cluster: Sensor protein; n=2; Roseobacter|Rep: S... 32 7.9
UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase; ... 32 7.9
UniRef50_Q7SB57 Cluster: Putative uncharacterized protein NCU062... 32 7.9
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 32 7.9
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 243 bits (595), Expect = 1e-63
Identities = 117/141 (82%), Positives = 126/141 (89%)
Frame = +3
Query: 66 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 245
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 246 PKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 425
P+RLFEGNA DE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 426 ILIRQRHIRVRKQVVNIPSFI 488
+LIRQRHIRVRKQVVNIPSFI
Sbjct: 128 VLIRQRHIRVRKQVVNIPSFI 148
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 148 bits (358), Expect = 8e-35
Identities = 71/139 (51%), Positives = 96/139 (69%)
Frame = +3
Query: 72 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 251
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 252 RLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 431
RL EG A Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+L
Sbjct: 69 RLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVL 128
Query: 432 IRQRHIRVRKQVVNIPSFI 488
IR + I+V KQVV++PSF+
Sbjct: 129 IRGKMIKVGKQVVDVPSFL 147
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 130 bits (314), Expect = 2e-29
Identities = 68/127 (53%), Positives = 83/127 (65%)
Frame = +3
Query: 69 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 248
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 249 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 428
+R+FEG A E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 429 LIRQRHI 449
LIRQ HI
Sbjct: 119 LIRQHHI 125
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 107 bits (257), Expect = 1e-22
Identities = 59/145 (40%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Frame = +3
Query: 60 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-E 236
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 237 EKDPKRLFEG-NAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 413
+ +FE + +D VL LK+ LERRLQT V++ GLA+S
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLGPDADIDNVLALKVPAQLERRLQTLVYRKGLARSP 123
Query: 414 HHARILIRQRHIRVRKQVVNIPSFI 488
AR L+ HI + + V +P ++
Sbjct: 124 KQARQLVTHGHIAIGGRRVTVPGYL 148
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 105 bits (253), Expect = 4e-22
Identities = 57/144 (39%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Frame = +3
Query: 60 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 239
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 240 --KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 413
+ R+ + +D VL LK+E L+RRLQTQV++ G A+S
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSENADIDDVLALKVEQQLDRRLQTQVYRRGFARSP 123
Query: 414 HHARILIRQRHIRVRKQVVNIPSF 485
AR I HI + + V IP +
Sbjct: 124 KQARQFITHGHIAIGGRRVTIPGY 147
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 104 bits (250), Expect = 9e-22
Identities = 51/140 (36%), Positives = 84/140 (60%)
Frame = +3
Query: 69 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 248
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 249 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 428
K + + L+ ++ + + L RRLQT V + L+K+IH ARI
Sbjct: 70 KIPSQSYGILWFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARI 129
Query: 429 LIRQRHIRVRKQVVNIPSFI 488
LI +HI+V+ Q+VN PSF+
Sbjct: 130 LIMHKHIQVKNQIVNKPSFL 149
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 103 bits (246), Expect = 3e-21
Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 7/146 (4%)
Frame = +3
Query: 72 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP- 248
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDI 66
Query: 249 ----KRLFEGNAXXXXXXXXXXXDEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKS 410
+ L D++++ L+ VL L I +LERRLQ +VF AGLAKS
Sbjct: 67 PINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKS 126
Query: 411 IHHARILIRQRHIRVRKQVVNIPSFI 488
+HHAR+LI R I ++ Q+V++P F+
Sbjct: 127 VHHARLLIGGRCISIKDQIVDVPGFM 152
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 98.7 bits (235), Expect = 6e-20
Identities = 55/140 (39%), Positives = 79/140 (56%)
Frame = +3
Query: 69 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 248
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ ++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTE 65
Query: 249 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 428
+ E + LD VL L +ED LERRLQT VF+ GLA++ AR
Sbjct: 66 QGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQ 125
Query: 429 LIRQRHIRVRKQVVNIPSFI 488
LI HI V +VV PS++
Sbjct: 126 LIVHGHIAVNGRVVTAPSYM 145
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 97.1 bits (231), Expect = 2e-19
Identities = 59/144 (40%), Positives = 76/144 (52%), Gaps = 1/144 (0%)
Frame = +3
Query: 60 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 236
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 237 EKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 416
D + +K LD VL L +E+ L+RRLQT VFK LA S
Sbjct: 64 ASDANAQKQLERMIKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALSEK 122
Query: 417 HARILIRQRHIRVRKQVVNIPSFI 488
AR LI HI V + V +P +
Sbjct: 123 QARQLITHGHITVNGRRVTVPGML 146
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 95.1 bits (226), Expect = 7e-19
Identities = 54/135 (40%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Frame = +3
Query: 90 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFE 263
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM-- 73
Query: 264 GNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 443
++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI
Sbjct: 74 --PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHG 131
Query: 444 HIRVRKQVVNIPSFI 488
H+ V + V P F+
Sbjct: 132 HVAVAGRRVTSPGFL 146
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 90.2 bits (214), Expect = 2e-17
Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Frame = +3
Query: 60 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 239
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL +
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 240 ----KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAK 407
+ ++ KL+ VL LK++D +ERRLQT +++ G A
Sbjct: 64 AGNLPEDSHYIRDAQNIVKKLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFAN 123
Query: 408 SIHHARILIRQRHIRVRKQVVNIPSFI 488
SI AR I HI + + + +P ++
Sbjct: 124 SIKQARQFIVHGHISLNGRKITVPGYL 150
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 89.8 bits (213), Expect = 3e-17
Identities = 51/143 (35%), Positives = 76/143 (53%)
Frame = +3
Query: 60 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 239
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTS 63
Query: 240 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
++ E ++ LD VL L +E LERRLQT VF+ GLA +
Sbjct: 64 AQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQ 121
Query: 420 ARILIRQRHIRVRKQVVNIPSFI 488
AR I HI V + +N PS++
Sbjct: 122 ARQFIVHGHIAVNGKKINAPSYL 144
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 89.4 bits (212), Expect = 4e-17
Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Frame = +3
Query: 60 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT-LE 236
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL +
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 237 EKDPKRLFEGN-----AXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 401
+ EG+ + +D +L LK E+ LERRLQTQV + GL
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGL 123
Query: 402 AKSIHHARILIRQRHIRVRKQVVNIPSFI 488
A+++ AR I HI + + IP +
Sbjct: 124 ARTVIQARQFITHGHIAINGRKATIPGML 152
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 89.0 bits (211), Expect = 5e-17
Identities = 51/143 (35%), Positives = 76/143 (53%)
Frame = +3
Query: 60 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 239
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 240 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
+ R ++ LD +LGL E++LERRLQT V+K GLA++I+
Sbjct: 64 AE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQ 121
Query: 420 ARILIRQRHIRVRKQVVNIPSFI 488
AR LI HI + + V P +I
Sbjct: 122 ARQLIVHGHIAIGGRRVTSPGYI 144
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 86.6 bits (205), Expect = 3e-16
Identities = 48/142 (33%), Positives = 85/142 (59%)
Frame = -3
Query: 485 ERRNVHHLLADTNMPLSDQDAGMMD*LRKTSLEHLSLKTALQEVLNLQTEHIIQFHLFLI 306
ER +V LL ++N+ L DQD+ +++ L +T L L L+++ QE+ NLQ++ IIQ L
Sbjct: 46 ERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFR 105
Query: 305 KHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQL 126
+ ++ +Q++ SI F+QSL +L + QQ +G +D + ++ +F+LV +T+ + LQ
Sbjct: 106 QDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQLERNSVNFSLVLQTVFTSQLQF 165
Query: 125 LIKTRLLERTSRSYVCFGKYRW 60
++T R+ S V G W
Sbjct: 166 GVQTSGFVRSLWSRVSLGVSSW 187
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 85.4 bits (202), Expect = 6e-16
Identities = 54/113 (47%), Positives = 67/113 (59%), Gaps = 7/113 (6%)
Frame = +3
Query: 168 EVWRVKYTLARIRKAARELLTL-EEKDPKRLFEGNAXXXXXXXXXXXDEKQMK------L 326
EVWRVK+TL +IRKA ELL L EKDP+ LFE N E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 327 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFF 152
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 84.2 bits (199), Expect = 1e-15
Identities = 48/133 (36%), Positives = 74/133 (55%)
Frame = +3
Query: 90 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGN 269
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEK 69
Query: 270 AXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 449
+ +LD VL L ++D LERRLQT + + GLAK++ AR I HI
Sbjct: 70 ERFLTKLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHI 129
Query: 450 RVRKQVVNIPSFI 488
V +VV+ PS++
Sbjct: 130 MVNGEVVDAPSYL 142
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 82.2 bits (194), Expect = 6e-15
Identities = 48/143 (33%), Positives = 72/143 (50%)
Frame = +3
Query: 57 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 236
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL--- 59
Query: 237 EKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 416
G E++ +LD VL L++ D LERRLQT V++ GLA ++
Sbjct: 60 --GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMG 116
Query: 417 HARILIRQRHIRVRKQVVNIPSF 485
AR + H+ V V PS+
Sbjct: 117 QARQFVSHGHVTVDGSRVTEPSY 139
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 80.2 bits (189), Expect = 2e-14
Identities = 43/138 (31%), Positives = 70/138 (50%)
Frame = +3
Query: 75 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 254
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L + D
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGM---DIDE 65
Query: 255 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 434
+ KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ +
Sbjct: 66 RADKEKELLDHLVRAGFISPNAKLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFV 125
Query: 435 RQRHIRVRKQVVNIPSFI 488
HI + + +N P +
Sbjct: 126 VHGHITLNGKKINAPGHL 143
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 77.4 bits (182), Expect = 2e-13
Identities = 48/142 (33%), Positives = 71/142 (50%)
Frame = +3
Query: 60 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 239
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 240 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
+ +R K LD VL L++ D L RRLQT V K + +
Sbjct: 64 EVRER---KEPVLLRSLARIGLVGKDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQ 120
Query: 420 ARILIRQRHIRVRKQVVNIPSF 485
AR + HI + +VV IPS+
Sbjct: 121 ARQAVVHGHITISDRVVTIPSY 142
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 69.7 bits (163), Expect = 3e-11
Identities = 46/138 (33%), Positives = 69/138 (50%)
Frame = +3
Query: 75 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 254
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSH--- 65
Query: 255 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 434
+ + E L+ VL + FLERRLQT VFK GLA++I AR LI
Sbjct: 66 --DTSDKIIARMVKFGILENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLI 123
Query: 435 RQRHIRVRKQVVNIPSFI 488
I V + V+IP ++
Sbjct: 124 THGFIAVNMKRVSIPGYM 141
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 3e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +3
Query: 171 VWRVKYTLARIRKAARELLTLEEKDPKRLF 260
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 1e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +3
Query: 306 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 413
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 50.0 bits (114), Expect = 3e-05
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = -3
Query: 272 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQLLIKTRLLERTS 93
S+ + +LR+LL++ +Q + + + L AP +LVA+ L+DDLQL ++ LLERTS
Sbjct: 136 SLTLEDALRVLLIKRKQHASGVAELVKGELHAPQLSLVAKAELTDDLQLGVEAILLERTS 195
Query: 92 R 90
R
Sbjct: 196 R 196
Score = 34.3 bits (75), Expect = 1.5
Identities = 19/36 (52%), Positives = 20/36 (55%)
Frame = -1
Query: 490 TMNEGMFTTCLRTRICLCLIKMRA*WIDFARPALNT 383
T G FT CL TRI IK RA D ARP+L T
Sbjct: 74 TKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKT 109
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 2e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 69 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 227
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 3e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 333 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 46.4 bits (105), Expect = 3e-04
Identities = 31/121 (25%), Positives = 53/121 (43%)
Frame = +3
Query: 126 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXX 305
EL+++ Y L+ + + R +R+ AR L L E+D R+ +A
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRV-RASAALLDKLYALGL 88
Query: 306 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
+ L+ + F RRL T + K +A+ + A + Q H+RV VV P+F
Sbjct: 89 VPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 148
Query: 486 I 488
+
Sbjct: 149 L 149
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 45.6 bits (103), Expect = 6e-04
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +3
Query: 306 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
+E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI SF
Sbjct: 69 EEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASF 127
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 45.2 bits (102), Expect = 8e-04
Identities = 32/117 (27%), Positives = 49/117 (41%)
Frame = +3
Query: 138 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQ 317
I +YGLR++ E + + ++RK A L L+E DP R K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 318 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
KL + + F ERRL + + + S A + H+R+ +VV PS I
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTI 146
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 45.2 bits (102), Expect = 8e-04
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +3
Query: 336 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYL 173
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 45.2 bits (102), Expect = 8e-04
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 482
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS 132
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.2 bits (102), Expect = 8e-04
Identities = 25/59 (42%), Positives = 33/59 (55%)
Frame = +3
Query: 312 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYM 150
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 44.0 bits (99), Expect = 0.002
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +3
Query: 333 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY 138
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 42.3 bits (95), Expect = 0.006
Identities = 19/59 (32%), Positives = 35/59 (59%)
Frame = +3
Query: 312 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYL 111
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.006
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +3
Query: 309 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.010
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 40.7 bits (91), Expect = 0.017
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = +3
Query: 126 ELKIIGEYGLRNKREVWRVKYTLAR-IRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 302
E+KI+ Y ++ KRE + L+R IR+ ++ ++ K P R E +
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRT-EMSGLLLEKLYVLG 86
Query: 303 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 482
+ L+ + F RRL + + +++++ HA +I H+RV VV P+
Sbjct: 87 LIPTKWDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPA 146
Query: 483 FI 488
F+
Sbjct: 147 FL 148
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 40.7 bits (91), Expect = 0.017
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYL 138
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 40.3 bits (90), Expect = 0.022
Identities = 31/97 (31%), Positives = 43/97 (44%)
Frame = +3
Query: 195 ARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRL 374
A +K + + LEEK RL G + K + GL + LE RL
Sbjct: 39 AERKKKSEYAIRLEEKQKVRLNYGVSERQMLRYM----RKARRSKGSTGLALLQMLEMRL 94
Query: 375 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 95 DCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 40.3 bits (90), Expect = 0.022
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +3
Query: 360 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
LE RL V++ G A SI AR ++ H V + VNIPSF
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF 127
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 39.9 bits (89), Expect = 0.030
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 333 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSY 131
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.030
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.030
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 321 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 39.9 bits (89), Expect = 0.030
Identities = 28/115 (24%), Positives = 48/115 (41%)
Frame = +3
Query: 138 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQ 317
+ +YG+ ++RE+ + T+ +IR L L + + R+ D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 318 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 482
LD + L L RRL + K + + I ++Q H+RV VV P+
Sbjct: 92 ASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVVVNPA 146
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 39.9 bits (89), Expect = 0.030
Identities = 43/134 (32%), Positives = 60/134 (44%)
Frame = +3
Query: 87 TPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEG 266
TPR ++ RL EL +G+ G +R ++ L R RK + L LEEK R G
Sbjct: 7 TPRFKRQR-RLLTELPGMGKAGALERRPYPPGQHGLQR-RKYSEFALQLEEKQKLRFHYG 64
Query: 267 NAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRH 446
+K ++V L + LE+RL VF+ G A SI AR L+
Sbjct: 65 -LREEQFRRLINKAKKSKATNWVEALV--NLLEKRLDNVVFRLGFASSIPAARQLVSHGK 121
Query: 447 IRVRKQVVNIPSFI 488
+ V + VNI S I
Sbjct: 122 VLVNGKKVNIGSQI 135
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 39.5 bits (88), Expect = 0.039
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 360 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
LE RL +F G+A +I AR L+ RHI V +V+IPS+
Sbjct: 54 LEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 39.5 bits (88), Expect = 0.039
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +3
Query: 333 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFL 133
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 38.7 bits (86), Expect = 0.069
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3
Query: 309 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSY 135
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 38.7 bits (86), Expect = 0.069
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +3
Query: 312 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSY 127
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.069
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 38.3 bits (85), Expect = 0.091
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSY 132
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 38.3 bits (85), Expect = 0.091
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF 137
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.12
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 37.9 bits (84), Expect = 0.12
Identities = 25/122 (20%), Positives = 50/122 (40%)
Frame = +3
Query: 123 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 302
++ +++ Y ++N+ + + IR+ A +L L DP R
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 303 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 482
K D + + RRL + + +A++I A I Q H+RV ++N P+
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPA 147
Query: 483 FI 488
++
Sbjct: 148 YL 149
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 37.5 bits (83), Expect = 0.16
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +3
Query: 309 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSY 133
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 37.5 bits (83), Expect = 0.16
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 354 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
+ LERRL T +F+ A S +AR LI HI + +VN+ S +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHL 151
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 37.5 bits (83), Expect = 0.16
Identities = 38/132 (28%), Positives = 52/132 (39%), Gaps = 11/132 (8%)
Frame = +3
Query: 123 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL-FEGNAXXXXXXXXX 299
+E KI+ Y +++ E + + RI K EL L E D R+ N
Sbjct: 27 RETKILRRYYIQDPEEYHKYNKLVGRITKLVSELRKLPEDDSFRIKMTDNLMEKLYVFKM 86
Query: 300 XX---DEKQMKLDYVLG-------LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 449
QM L V G L F RRL T + + + + A I Q HI
Sbjct: 87 MYIALSRYQMGLISVRGNLELCERLSASVFCRRRLATVLVQRKFCEHLKQAVTYIEQGHI 146
Query: 450 RVRKQVVNIPSF 485
RV VVNIP++
Sbjct: 147 RVGLDVVNIPAY 158
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.5 bits (83), Expect = 0.16
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +3
Query: 309 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSF 134
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 37.5 bits (83), Expect = 0.16
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +3
Query: 309 EKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 473
E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +V
Sbjct: 61 ENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSILVK 120
Query: 474 IPSFI 488
PSFI
Sbjct: 121 KPSFI 125
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.1 bits (82), Expect = 0.21
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = +3
Query: 360 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSF 132
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.37
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 360 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 35.9 bits (79), Expect = 0.48
Identities = 25/122 (20%), Positives = 52/122 (42%)
Frame = +3
Query: 123 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 302
++++ IG +GL+ K E +A+ + +E+ L ++DP + +
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 303 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 482
D KQ ++ + F RR + K A+ + A L+ H+R+ + + P+
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVRIGPETIQDPA 146
Query: 483 FI 488
I
Sbjct: 147 LI 148
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 35.9 bits (79), Expect = 0.48
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +3
Query: 360 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
LE+RL V++ GLA++ AR L+ HI V + V+IPS+
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSY 131
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 0.48
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 0.64
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 35.1 bits (77), Expect = 0.84
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
G + LERRL V++A ++ AR + H+ V + VNIPS+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSY 133
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.1
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 339 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 485
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 34.7 bits (76), Expect = 1.1
Identities = 11/43 (25%), Positives = 28/43 (65%)
Frame = +3
Query: 360 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P ++
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYM 186
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 34.7 bits (76), Expect = 1.1
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = +3
Query: 162 KREVWRVKYTLA-RIRKAARELLTLEEKDPKR--LFEGNAXXXXXXXXXXXDEKQMKLDY 332
KRE + + TLA + R+ A + L E DP R E + ++
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGK 99
Query: 333 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
V G F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+
Sbjct: 100 VTGAS---FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFM 148
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 34.7 bits (76), Expect = 1.1
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 360 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
LE RL V++ G A + AR L+ H V + VNIPS++
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYL 138
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 34.7 bits (76), Expect = 1.1
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 333 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
V G + LERR+ V++AG A S HAR ++ I + + V IPS I
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSII 136
>UniRef50_Q2UJB9 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 950
Score = 34.3 bits (75), Expect = 1.5
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = -2
Query: 480 KECSPPACGHEYASV*SRCGHDGLTSQDQP*TPESEDGAPRSPQSSNRAHNPVSSVSHQA 301
++ + PA E GHD + + + P D +P S +H P S+ H
Sbjct: 564 EQVNTPAPQPEQPKDHEESGHDNQSHEIESPKPTGADSSPHEDPSREDSHGPSSTPVHGQ 623
Query: 300 LRP*PDDVVEHCLQTIS*DPS--PRVSTVHGQP 208
P D + + ++ S + S P + VHGQP
Sbjct: 624 PEPTGVDGIHNQEESSSHEDSHGPSSTPVHGQP 656
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 33.9 bits (74), Expect = 2.0
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 321 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 482
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPS 135
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 33.5 bits (73), Expect = 2.6
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 105 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL 257
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL 665
>UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep:
CG33196-PB - Drosophila melanogaster (Fruit fly)
Length = 23015
Score = 33.1 bits (72), Expect = 3.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 353 GLLGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSC 454
GL G P+S G G+ C+V+ CP+ Y C
Sbjct: 9018 GLSGDPTSVIGCHGYECQVDADCPNSKACMGYRC 9051
>UniRef50_A0BWL3 Cluster: Chromosome undetermined scaffold_132, whole
genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_132, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 1572
Score = 33.1 bits (72), Expect = 3.4
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = -3
Query: 401 KTSLEHLSLKTALQEVLNLQTEHIIQ-FHLFLIKHSDPNQTT**SIAFKQSLRILLLECQ 225
+ L H L T LQE+ NL E I++ H F+ Q+ + L + L CQ
Sbjct: 999 REKLHHSELTTLLQELQNLINEPIVESLHGFVSLIQCVYQSE--YADLNRVLTLFQLICQ 1056
Query: 224 QFTGSLTDASERVLDAPHFTLVAETILSDDLQLLIK 117
Q GS ++ + L+A+ LSD L++L++
Sbjct: 1057 QGAGSSSEELINSNLSKAMDLLAQNNLSDSLEILLE 1092
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 33.1 bits (72), Expect = 3.4
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +3
Query: 360 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 482
LERRL V++A A +I AR L+ HIRV NI S
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS 132
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 32.7 bits (71), Expect = 4.5
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +3
Query: 360 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ +
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIM 182
>UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like
protein; n=5; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to EGF-like protein -
Strongylocentrotus purpuratus
Length = 1686
Score = 32.3 bits (70), Expect = 6.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 374 SDSGVQGWSCEVNPSCPHLDQTEAYSCPQAGGE 472
SDSG C+V S P DQ +YS P GG+
Sbjct: 968 SDSGQASCLCDVGFSGPTCDQVSSYSIPMFGGD 1000
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 32.3 bits (70), Expect = 6.0
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = +3
Query: 180 VKYT-LAR-IRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIE 353
+KY L+R +R A ++ L+ KDP R + KQ L +
Sbjct: 1 MKYNKLSRHVRTLANKIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSAS 59
Query: 354 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
F RRL + K +A+++ A ++ HIRV ++V P+F+
Sbjct: 60 SFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPELVLDPAFL 104
>UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1;
Methanosaeta thermophila PT|Rep: Thiamine biosynthesis
protein - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 335
Score = 32.3 bits (70), Expect = 6.0
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 30 ELAKMVNNRVPSVFSKTY-VTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 206
ELA+ + S+ S+ P++P +ARL++ L+I GE GLR+ + RIR
Sbjct: 275 ELARRIGTYDISIGSQQCRAAPKKPVTRARLEEILRIEGELGLRDLAMELADGVEIVRIR 334
Query: 207 K 209
+
Sbjct: 335 R 335
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 31.9 bits (69), Expect = 7.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 354 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
DF RRL V + + A LI+Q HI+V V+ P++I
Sbjct: 105 DFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIRNPAYI 149
>UniRef50_A3X9S8 Cluster: Sensor protein; n=2; Roseobacter|Rep:
Sensor protein - Roseobacter sp. MED193
Length = 778
Score = 31.9 bits (69), Expect = 7.9
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -3
Query: 269 IAFKQSLRILLLECQQFTGSLTDA-SERVLDAPHFTLVAETILSDDLQLL 123
I +Q +L+E +QF GS+ DA S R+L+A + + + S D +LL
Sbjct: 106 IIIEQDTNAVLIEVKQFVGSMVDAESLRILEATRASALMVSTFSADGELL 155
>UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase;
n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
DegT/DnrJ/EryC1/StrS aminotransferase - Desulfovibrio
vulgaris subsp. vulgaris (strain DP4)
Length = 392
Score = 31.9 bits (69), Expect = 7.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 111 ARLDQELKIIGEYGLRNKREVWRVKYTLA 197
A L Q ++++ YG+ + RE+W+ +YT A
Sbjct: 203 ADLAQRMRVLSMYGISDAREIWQKRYTRA 231
>UniRef50_Q7SB57 Cluster: Putative uncharacterized protein
NCU06256.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU06256.1 - Neurospora crassa
Length = 959
Score = 31.9 bits (69), Expect = 7.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 392 GWSCEVNPSCPHLDQTEAYSCPQAGGE 472
GW CE+N C HL Q E AG E
Sbjct: 892 GWDCELNSDCSHLSQGEERGWRFAGDE 918
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 31.9 bits (69), Expect = 7.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 360 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
+E+RL ++++G K+I AR R I V +V IPS I
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI 242
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,632,276
Number of Sequences: 1657284
Number of extensions: 9232153
Number of successful extensions: 26785
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 25996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26755
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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