Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E08
         (490 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.37 
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   4.5  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   6.0  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 417 DGLTSQDQP*TPESEDGAPR 358
           DG + Q+QP +PES    PR
Sbjct: 413 DGGSGQNQPESPESSSSTPR 432


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -3

Query: 98  TSRSYVCFGKYRWYPVVHHLGELVS 24
           T  S  C+  Y W P+ H    +++
Sbjct: 141 TYLSVTCYVTYAWSPIDHTESNIIN 165


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 108 SRTDVEELRMFWK 70
           SR +V+E+R+ WK
Sbjct: 52  SRKNVQEIRLEWK 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,287
Number of Sequences: 336
Number of extensions: 2201
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)