Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E08
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             237   5e-63
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_20253| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   4.7  
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)              28   4.7  
SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  237 bits (579), Expect = 5e-63
 Identities = 114/141 (80%), Positives = 123/141 (87%)
 Frame = +3

Query: 66  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 245
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 246 PKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 425
           P+RLFEGNA           DE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124

Query: 426 ILIRQRHIRVRKQVVNIPSFI 488
           +LIRQRHIRVRKQ+VN+PSF+
Sbjct: 125 VLIRQRHIRVRKQLVNVPSFV 145


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 26/122 (21%), Positives = 52/122 (42%)
 Frame = +3

Query: 123 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 302
           +E+K++ +Y ++ + +  +       I+  A ++  L+ KDP R+ E             
Sbjct: 28  REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRV-EATEQILEKLHNMG 86

Query: 303 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 482
               +  L     +    F  RRL   +    +A+ +  A   I Q H+RV  +V+  P+
Sbjct: 87  LISTKKNLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPA 146

Query: 483 FI 488
           F+
Sbjct: 147 FL 148


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 93  RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 251
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_20253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -2

Query: 174 TLHACCG---DHTLR*SSTPDQDAPSRTDVEELRMFW 73
           TL  CCG   D T +  S+PD   PSR       ++W
Sbjct: 4   TLETCCGYEYDRTRKSMSSPDFQGPSRAHRTPQEVWW 40


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 108 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 251
           K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49


>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
          Length = 476

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 396 QP*TPESEDGAPRSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS 250
           +P TP ++  +   P +SN +HN ++      LR    + V HC+  ++
Sbjct: 408 EPGTPGAKGESGGPPFASNASHNELNRTLCHTLRHSGSNTVTHCVTRVT 456


>SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 387 TPESEDGAPRSPQSSNRAHNP 325
           TPE + G PR+P+ S R  +P
Sbjct: 476 TPEMKRGKPRTPEKSRRRKSP 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,383
Number of Sequences: 59808
Number of extensions: 297355
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)