Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E08
(490 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 228 2e-60
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 36 0.016
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 30 1.0
U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. 28 4.2
U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated p... 28 4.2
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 27 5.5
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 5.5
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 5.5
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 27 5.5
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein. 27 7.3
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ... 27 7.3
AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rna... 27 7.3
U80839-15|AAB37911.1| 430|Caenorhabditis elegans Hypothetical p... 27 9.7
U64847-11|AAB04878.2| 151|Caenorhabditis elegans Hypothetical p... 27 9.7
AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 228 bits (557), Expect = 2e-60
Identities = 109/145 (75%), Positives = 124/145 (85%)
Frame = +3
Query: 54 RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 233
R+ +V SK +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3 RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62
Query: 234 EEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 413
E+KDPKRLFEGNA DE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSI
Sbjct: 63 EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122
Query: 414 HHARILIRQRHIRVRKQVVNIPSFI 488
HHARILI+Q HIRVR+QVV++PSFI
Sbjct: 123 HHARILIKQHHIRVRRQVVDVPSFI 147
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 35.9 bits (79), Expect = 0.016
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = +3
Query: 162 KREVWRVKYTLA-RIRKAARELLTLEEKDPKR--LFEGNAXXXXXXXXXXXDEKQMKLDY 332
KRE + + TLA + R+ A + L E DP R E + ++
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGK 99
Query: 333 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
V G F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+
Sbjct: 100 VTGAS---FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFM 148
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 398 SCEVNPSCPHLDQTEAYSCPQAGGEHS 478
+CE+N CP D ++CP GG H+
Sbjct: 363 ACELN--CPKCDPKHTFTCPAVGGIHN 387
>U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein.
Length = 777
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -2
Query: 243 PSPRVSTVHGQPYGCERACT*RATLHAC-CGD 151
P P + H P GC R C L C CGD
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGD 571
>U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated
protein 8 protein.
Length = 777
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -2
Query: 243 PSPRVSTVHGQPYGCERACT*RATLHAC-CGD 151
P P + H P GC R C L C CGD
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGD 571
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
K04H4.2c protein.
Length = 1446
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 359 LGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCP 457
+GA S G++C N CP T + CP
Sbjct: 937 VGACMSGRCASGYTCSNNVCCPQTTTTNPFVCP 969
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 359 LGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCP 457
+GA S G++C N CP T + CP
Sbjct: 279 VGACMSGRCASGYTCSNNVCCPQTTTTNPFVCP 311
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 359 LGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCP 457
+GA S G++C N CP T + CP
Sbjct: 279 VGACMSGRCASGYTCSNNVCCPQTTTTNPFVCP 311
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +3
Query: 345 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 470
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +3
Query: 345 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 470
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 387 TPESEDGAPRSPQSSNRAHNPVSSVSHQALRP*PDDVVE-HCLQTIS*DPSPRVSTVHGQ 211
T + GAP + N P ++ + A P V + L +S + + + ++
Sbjct: 749 TTAASSGAPVNSNIQNHRATPSTAGAPMAATPIMTAVTSANELAALSPERAQALLNMYRM 808
Query: 210 PYGCERACT 184
P GC+R CT
Sbjct: 809 PLGCQRCCT 817
>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
Length = 1110
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = -2
Query: 477 ECSPPACGHEYASV*SRCGHDGLTSQDQP*TPESEDGAPRSPQSSNRAHNPVSSVSHQAL 298
+C P CG EY+ + + H + ++P E D +S+RA + + +H L
Sbjct: 277 KCEYPGCGKEYSRLENLKTHRRTHTGEKPYKCEFADCEKAFSNASDRAKH--QNRTHSNL 334
Query: 297 RP*PDDVVEHCLQTIS*DPS---PRVSTVHG 214
+P + + C ++ + DPS + VHG
Sbjct: 335 KPYSCQIPQ-CTKSYT-DPSSLRKHIKAVHG 363
>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
protein Y47D3A.6a protein.
Length = 1109
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = -2
Query: 477 ECSPPACGHEYASV*SRCGHDGLTSQDQP*TPESEDGAPRSPQSSNRAHNPVSSVSHQAL 298
+C P CG EY+ + + H + ++P E D +S+RA + + +H L
Sbjct: 276 KCEYPGCGKEYSRLENLKTHRRTHTGEKPYKCEFADCEKAFSNASDRAKH--QNRTHSNL 333
Query: 297 RP*PDDVVEHCLQTIS*DPS---PRVSTVHG 214
+P + + C ++ + DPS + VHG
Sbjct: 334 KPYSCQIPQ-CTKSYT-DPSSLRKHIKAVHG 362
>AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform b protein.
Length = 582
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 309 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 464
EK +Y+ + EDF + + +FK G KS AR +I + V +
Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESE 478
>U80839-15|AAB37911.1| 430|Caenorhabditis elegans Hypothetical
protein ZC204.2 protein.
Length = 430
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 411 LTSQDQP*TPESEDGAP-RSPQSSNRAHNPVSS 316
L+S +P TPE AP +SP+S+ A +P+SS
Sbjct: 173 LSSSTEPRTPEESHCAPEKSPESTENA-SPLSS 204
>U64847-11|AAB04878.2| 151|Caenorhabditis elegans Hypothetical
protein F08F3.1 protein.
Length = 151
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 57 VPSVFSKTYVTPRRPFEKARLDQELKI 137
VP ++T VTP RP EK + ++++I
Sbjct: 74 VPVFHNETTVTPERPIEKKKRVRQIQI 100
>AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical
protein Y67D8C.2 protein.
Length = 460
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 75 WKIPMVPCCSPSWRAR 28
W + VP CS WR+R
Sbjct: 432 WDVSQVPSCSQDWRSR 447
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,486
Number of Sequences: 27780
Number of extensions: 217968
Number of successful extensions: 744
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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