Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E08
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 378 SEDGAPRSPQSSNR 337
           S +G+PRSP+S++R
Sbjct: 318 SNNGSPRSPESNSR 331


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 45  PSWRARLNTRLAAS 4
           PS   RLNTRL A+
Sbjct: 126 PSGMVRLNTRLQAT 139


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 112 AFSNGRRGVTYVLENTDGTL 53
           + S  +  +TYV +N +GTL
Sbjct: 206 SISYEQTAITYVWKNDEGTL 225


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 112 AFSNGRRGVTYVLENTDGTL 53
           + S  +  +TYV +N +GTL
Sbjct: 206 SISYEQTAITYVWKNDEGTL 225


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 112 AFSNGRRGVTYVLENTDGTL 53
           + S  +  +TYV +N +GTL
Sbjct: 257 SISYEQTAITYVWKNDEGTL 276


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 112 AFSNGRRGVTYVLENTDGTL 53
           + S  +  +TYV +N +GTL
Sbjct: 206 SISYEQTAITYVWKNDEGTL 225


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +2

Query: 47  EQQGTIGIFQNIRNSSTSVREGAS*SGVEDHRRVWSPQQA*SVARQVHARS 199
           E Q  +    + R S       A  + + + RR++SP     VAR+  A S
Sbjct: 641 ENQNCLDASSSRRGSKIGSPTPAESTFIPEERRIYSPITFQDVARRSVANS 691


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,169
Number of Sequences: 438
Number of extensions: 2415
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)